cassava38867.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava38867.m1 T62342_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava38867.m1 YTH 487 577

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

168 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29890.m000285 Ricinus communis 29890.m000285 N 0.725
29929.m004643 Ricinus communis 29929.m004643 N 0.714
29950.m001140 Ricinus communis 29950.m001140 N 0.791
30169.m006347 Ricinus communis 30169.m006347 N 0.802
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.835
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.879
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.736
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.780
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.703
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.824
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.780
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.901
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.857
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.758
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.978
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.978
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.978
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.978
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.956
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.956
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.956
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.956
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.956
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.978
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.978
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.978
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 1.000
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 1.000
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 1.000
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 1.000
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 1.000
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 1.000
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 1.000
cassava35664.valid.m1 Manihot esculenta cassava35664.valid.m1 N 0.758
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 1.000
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 1.000
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 1.000
cassava38866.m1 Manihot esculenta cassava38866.m1 N 1.000
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.725
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.725
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.879
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.813
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.901
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.879
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.868
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.769
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.846
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.835
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.791
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.780
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.868
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.857
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.802
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.703
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.901
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.813
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.780
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.846
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.824
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.780
MDP0000124048 Malus x domestica MDP0000124048 N 0.901
MDP0000129009 Malus x domestica MDP0000129009 N 0.868
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.703
MDP0000248088 Malus x domestica MDP0000248088 N 0.703
MDP0000286471 Malus x domestica MDP0000286471 N 0.703
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.879
MDP0000552419 Malus x domestica MDP0000552419 N 0.703
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.879
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.813
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.780
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.780
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.802
mgf009938m Mimulus guttatus mgf009938m N 0.890
mgf013853m Mimulus guttatus mgf013853m N 0.890
mgf013935m Mimulus guttatus mgf013935m N 0.901
mgf017987m Mimulus guttatus mgf017987m N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.846
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.736
PK23716.1 Cannabis sativa PK23716.1 N 0.879
ppa002483m Prunus persica ppa002483m N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
ppa003664m Prunus persica ppa003664m N 0.714
ppa018635m Prunus persica ppa018635m N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.857
SB01G008170 Sorghum bicolor Sb01g008170 N 0.868
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.802
SB02G003990 Sorghum bicolor Sb02g003990 N 0.846
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
SB06G027960 Sorghum bicolor Sb06g027960 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.879
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.747
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.901
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.890
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703