CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK29685.1
(
Cannabis sativa
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PK29685.1
T01781_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK29685.1
CCCH ZF
94
120
PDEDNCIFYMRTGYCGYGSRCRFNHPR
PK29685.1
CCCH ZF
141
166
GQPVCQYYMRTGTCKFGASCKYHHPR
PK29685.1
CCCH ZF
186
212
PGEKECTYYVKTGQCKFGVSCKFHHPH
PK29685.1
CCCH ZF
354
380
PGQPECQYYMRTGDCKFGSSCRYHHPP
PK29685.1
CCCH ZF
400
426
PGAPLCSHYAQRGACKFGPACKFDHPL
Links
Other
CCCH ZF
family RBPs
Other
Cannabis sativa
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000197339
Malus x domestica
MDP0000197339
N
0.000
MDP0000215901
Malus x domestica
MDP0000215901
N
0.000
MDP0000310288
Malus x domestica
MDP0000310288
N
0.000