PK29685.1 (Cannabis sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PK29685.1 T01781_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK29685.1 CCCH ZF 94 120
PK29685.1 CCCH ZF 141 166
PK29685.1 CCCH ZF 186 212
PK29685.1 CCCH ZF 354 380
PK29685.1 CCCH ZF 400 426

Links

Other CCCH ZF family RBPs
Other Cannabis sativa RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29726.m004014 Ricinus communis 29726.m004014 N 0.881
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.873
MDP0000319251 Malus x domestica MDP0000319251 N 0.873
ppa005056m Prunus persica ppa005056m N 0.866
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.859
MDP0000535412 Malus x domestica MDP0000535412 N 0.858
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.851
mgf008934m Mimulus guttatus mgf008934m N 0.822
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.821
mgf002685m Mimulus guttatus mgf002685m N 0.813
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.813
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.799
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.785
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.785
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.785
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.770
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.761
mgf026218m Mimulus guttatus mgf026218m N 0.761
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.756
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.746
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.731
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.731
ppa005229m Prunus persica ppa005229m N 0.724
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.719
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.716
MDP0000207283 Malus x domestica MDP0000207283 N 0.716
SB03G009930 Sorghum bicolor Sb03g009930 N 0.711
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.711
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.709
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.704
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.704
29647.m002009 Ricinus communis 29647.m002009 N 0.701
mgf004851m Mimulus guttatus mgf004851m N 0.701
mgf010716m Mimulus guttatus mgf010716m N 0.701
mgf001793m Mimulus guttatus mgf001793m N 0.701