CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI4G05990
(
Brachypodium distachyon
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
BRADI4G05990
T02007_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI4G05990.2
CCCH ZF
267
290
VPCPEFRSAASCRKGDACEYAHGV
Links
Other
CCCH ZF
family RBPs
Other
Brachypodium distachyon
RBPs
53 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma20g22120.1
Glycine max
Glyma20g22120.1
N
0.000
fgenesh1_pg.C_scaffold_32000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_32000002
N
0.000
fgenesh1_pg.C_scaffold_49000015
Phytophthora ramorum
fgenesh1_pg.C_scaffold_49000015
N
0.000
fgenesh1_pg.C_scaffold_58000098
Phytophthora ramorum
fgenesh1_pg.C_scaffold_58000098
N
0.000
fgenesh1_pg.C_scaffold_737000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_737000002
N
0.000
fgenesh1_pg.C_scaffold_937000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_937000002
N
0.000