BRADI4G05990 (Brachypodium distachyon)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BRADI4G05990 T02007_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G05990.2 CCCH ZF 267 290

Links

Other CCCH ZF family RBPs
Other Brachypodium distachyon RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.840
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.840
MDP0000678327 Malus x domestica MDP0000678327 N 0.833
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.800
ppa002415m Prunus persica ppa002415m N 0.792
cassava23256.valid.m1 Manihot esculenta cassava23256.valid.m1 N 0.792
29681.m001358 Ricinus communis 29681.m001358 N 0.792
cassava23387.valid.m1 Manihot esculenta cassava23387.valid.m1 N 0.792
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.792
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.792
MDP0000588193 Malus x domestica MDP0000588193 N 0.792
cassava23386.valid.m1 Manihot esculenta cassava23386.valid.m1 N 0.792
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.792
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.792
GSVIVG00024728001 Vitis vinifera GSVIVG00024728001 N 0.792
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.792
B9GIG9_POPTR Populus trichocarpa POPTR_0001s25960 N 0.792
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.792
PK15838.1 Cannabis sativa PK15838.1 N 0.792
B9HP30_POPTR Populus trichocarpa POPTR_0009s05150 N 0.792
PK05226.1 Cannabis sativa PK05226.1 N 0.792
SB09G002390 Sorghum bicolor Sb09g002390 N 0.760
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.750
PK25575.1 Cannabis sativa PK25575.1 N 0.750
LjSGA_116351.1 Lotus japonicus LjSGA_116351.1 N 0.750
Glyma18g06980.1 Glycine max Glyma18g06980.1 N 0.750
ppa002251m Prunus persica ppa002251m N 0.750
MDP0000699611 Malus x domestica MDP0000699611 N 0.750
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.750
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.750
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.750
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.750
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.750
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.750
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.750
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.750
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.750
LOC_Os12g33090 Oryza sativa LOC_Os12g33090 N 0.720
GRMZM2G027298 Zea mays GRMZM2G027298 N 0.720
SB08G016640 Sorghum bicolor Sb08g016640 N 0.720
BRADI4G06290 Brachypodium distachyon BRADI4G06290 N 0.720
AT5G58620 Arabidopsis thaliana AT5G58620-TAIR-G N 0.708
MDP0000673185 Malus x domestica MDP0000673185 N 0.708
MDP0000196475 Malus x domestica MDP0000196475 N 0.708
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.708
XM_002864537.1 Arabidopsis lyrata fgenesh2_kg.8__1801__AT5G58620.1 N 0.708
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.708
Medtr5g079420 Medicago truncatula Medtr5g079420 N 0.708
Glyma11g27130.1 Glycine max Glyma11g27130.1 N 0.708
mgf012825m Mimulus guttatus mgf012825m N 0.708
MDP0000320891 Malus x domestica MDP0000320891 N 0.708
Cucsa.368500 Cucumis sativus Cucsa.368500 N 0.708
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.708