CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE12566
(
Drosophila yakuba
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0230297
T03809_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0257576
CCCH ZF
1
19
MVVCRFFQQGSCRYGTKCH
Links
Other
CCCH ZF
family RBPs
Other
Drosophila yakuba
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK04155.1
Cannabis sativa
PK04155.1
N
0.000
Cucsa.094980
Cucumis sativus
Cucsa.094980
N
0.000
Glyma11g36830.1
Glycine max
Glyma11g36830.1
N
0.000
MDP0000127313
Malus x domestica
MDP0000127313
N
0.000
cassava24038.valid.m1
Manihot esculenta
cassava24038.valid.m1
N
0.000
mgf012420m
Mimulus guttatus
mgf012420m
N
0.000
B9IAB2_POPTR
Populus trichocarpa
POPTR_0014s14580
N
0.000
GSVIVG00031632001
Vitis vinifera
GSVIVG00031632001
N
0.000