CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh2_kg.7_#_69_#_840_2_CFPN
(
Serpula lacrymans
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
fgenesh2_kg.7_#_69_#_840_2_CFPN
T06133_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.7_#_69_#_840_2_CFPN
CCCH ZF
50
75
PKTVLCAFYKAGNCEKGTKCKFSHDM
fgenesh2_kg.7_#_69_#_840_2_CFPN
CCCH ZF
136
156
QKFGWFWECPNGEKCQYRHAL
Links
Other
CCCH ZF
family RBPs
Other
Serpula lacrymans
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SBP1
Saccharomyces cerevisiae
YHL034C
N
0.000
Skud_Contig1834.2
Saccharomyces kudriavzevii
Skud_Contig1834.2
N
0.000
9478_YHL034C
Saccharomyces mikatae
9478_YHL034C
N
0.000
10543_YHL034C
Saccharomyces paradoxus
10543_YHL034C
N
0.000