CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SBP1
(
Saccharomyces cerevisiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
YHL034C
T46345_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
YHL034C
RRM
39
113
IFIGNVAHECTEDDLKQLFVEEFGDEVSVEIPIKEHTDGHIPASKHALVKFPTKIDFDNIKENYDTKVVKDREIH
YHL034C
RRM
188
268
LYINNVPFKATKEEVAEFFGTDADSISLPMRKMRDQHTGRIFTSDSANRGMAFVTFSGENVDIEAKAEEFKGKVFGDRELT
Links
Other
RRM
family RBPs
Other
Saccharomyces cerevisiae
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
10543_YHL034C
Saccharomyces paradoxus
10543_YHL034C
N
0.955
9478_YHL034C
Saccharomyces mikatae
9478_YHL034C
N
0.929
10114_YHL034C
Saccharomyces bayanus
10114_YHL034C
N
0.904
Skud_Contig1834.2
Saccharomyces kudriavzevii
Skud_Contig1834.2
N
0.872