CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
AAH75189
(
Xenopus laevis
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
AAH75189
T07733_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZCRB1
M085_0.6
Homo sapiens
GRHUUAA
RNAcompete
Ray et al.(2013)
RNCMPT00087
0.854
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH75189
RRM
12
82
VYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCVRGLNNKQLFGRAIK
AAH75189
CCHC ZF
105
122
SRCYECGDTGHLSYACPK
Links
Other
CCHC ZF,RRM
family RBPs
Other
Xenopus laevis
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_10951
Chaetomium globosum
CHGG_10951
N
0.000
GLRG_10685
Colletotrichum graminicola
GLRG_10685
N
0.000
FVEG_05822
Fusarium verticillioides
FVEG_05822
N
0.000
MGG_01978
Magnaporthe oryzae
MGG_01978
N
0.000
estExt_Genewise1Plus.C_60855
Myceliophthora thermophila
estExt_Genewise1Plus.C_60855
N
0.000
NCU02208
Neurospora crassa
NCU02208
N
0.000
estExt_fgenesh3_kg.C_90117
Neurospora discreta
estExt_fgenesh3_kg.C_90117
N
0.000
estExt_fgenesh2_kg.C_80085
Neurospora tetrasperma
estExt_fgenesh2_kg.C_80085
N
0.000
estExt_genemark.C_70730
Thielavia terrestris
estExt_genemark.C_70730
N
0.000
estExt_fgenesh1_pm.C_30019
Trichoderma reesei
estExt_fgenesh1_pm.C_30019
N
0.000
estExt_Genewise1.C_130084
Trichoderma virens
estExt_Genewise1.C_130084
N
0.000