CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CHGG_10951
(
Chaetomium globosum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CHGG_10951
T28640_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CHGT_10951
RRM
64
120
LLKKLNSVGRVSEDSVYMPMGDNGLSLRFAFVEYSSPAEAAAAVRQLDFTPLDKKHT
Links
Other
RRM
family RBPs
Other
Chaetomium globosum
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_60855
Myceliophthora thermophila
estExt_Genewise1Plus.C_60855
N
0.877
FGSG_05777
Fusarium graminearum
FGSG_05777
N
0.842
GLRG_10685
Colletotrichum graminicola
GLRG_10685
N
0.807
FVEG_05822
Fusarium verticillioides
FVEG_05822
N
0.772
estExt_fgenesh3_kg.C_90117
Neurospora discreta
estExt_fgenesh3_kg.C_90117
N
0.754
estExt_fgenesh2_kg.C_80085
Neurospora tetrasperma
estExt_fgenesh2_kg.C_80085
N
0.754
NCU02208
Neurospora crassa
NCU02208
N
0.754
estExt_Genewise1.C_130084
Trichoderma virens
estExt_Genewise1.C_130084
N
0.741
MGG_01978
Magnaporthe oryzae
MGG_01978
N
0.737
estExt_fgenesh1_pm.C_30019
Trichoderma reesei
estExt_fgenesh1_pm.C_30019
N
0.719
estExt_genemark.C_70730
Thielavia terrestris
estExt_genemark.C_70730
N
0.719