CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os02g34030
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g34030
T10941_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g34030.1
CCHC ZF
297
314
VKCFNCDEYGHYSKQCRK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma06g46320.1
Glycine max
Glyma06g46320.1
N
0.000
Glyma12g10890.1
Glycine max
Glyma12g10890.1
N
0.000
BGIOSIBCE023057
Oryza indica
BGIOSIBCE023057
N
0.000
LOC_Os02g06584
Oryza sativa
LOC_Os02g06584
N
0.000
LOC_Os06g46890
Oryza sativa
LOC_Os06g46890
N
0.000
fgenesh2_pg.C_scaffold_4000092
Selaginella moellendorfii
fgenesh2_pg.C_scaffold_4000092
N
0.000
SB04G004243
Sorghum bicolor
Sb04g004243
N
0.000
GSVIVG00030622001
Vitis vinifera
GSVIVG00030622001
N
0.000
GRMZM2G119640
Zea mays
GRMZM2G119640
N
0.000