LOC_Os04g54450 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os04g54450 T11337_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g54450.1 CCHC ZF 298 315

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R006793 Ailuropoda melanoleuca Ame_R006793 I 0.000
FMR1 Anolis carolinensis ENSACAG00000007899 N 0.000
Q0II33_BOVIN Bos taurus ENSBTAG00000012552 N 0.000
LOC100414871 Callithrix jacchus ENSCJAG00000003925 I 0.000
FMR1 Canis familiaris ENSCAFG00000019085 I 0.000
FMR1 Cavia porcellus ENSCPOG00000003723 N 0.000
FMR1 Choloepus hoffmanni ENSCHOG00000006340 N 0.000
FXR1 Choloepus hoffmanni ENSCHOG00000012877 N 0.000
FMR1 Dasypus novemcinctus ENSDNOG00000019486 I 0.000
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.000
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.000
Fmr1 Dipodomys ordii ENSDORG00000012501 N 0.000
FMR1 Echinops telfairi ENSETEG00000006061 I 0.000
FMR1 Erinaceus europaeus ENSEEUG00000015366 N 0.000
FMR1 Felis catus ENSFCAG00000007228 I 0.000
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.000
FMR1 Gorilla gorilla ENSGGOG00000010373 N 0.000
FMR1 Homo sapiens ENSG00000102081 D 0.000
FMR1 Loxodonta africana ENSLAFG00000013592 N 0.000
FMR1 Macaca mulatta ENSMMUG00000015814 I 0.000
FXR1 Macropus eugenii ENSMEUG00000004706 N 0.000
FMR1 Macropus eugenii ENSMEUG00000014280 N 0.000
FMR1 Meleagris gallopavo ENSMGAG00000008270 N 0.000
FMR1 Monodelphis domestica ENSMODG00000005550 I 0.000
Fmr1 Mus musculus ENSMUSG00000000838 I 0.000
FMR1 Myotis lucifugus ENSMLUG00000000587 N 0.000
FMR1 Ochotona princeps ENSOPRG00000012759 N 0.000
FXR2 Ornithorhynchus anatinus ENSOANG00000005646 N 0.000
FMR1 Ornithorhynchus anatinus ENSOANG00000001097 I 0.000
FMR1 Oryctolagus cuniculus ENSOCUG00000014621 N 0.000
FXR2 Otolemur garnettii ENSOGAG00000008146 N 0.000
FMR1 Otolemur garnettii ENSOGAG00000013061 N 0.000
FMR1 Pan troglodytes ENSPTRG00000022349 I 0.000
ENSPPYG00000020797 Pongo pygmaeus ENSPPYG00000020797 I 0.000
FMR1 Procavia capensis ENSPCAG00000011936 N 0.000
FMR1 Pteropus vampyrus ENSPVAG00000013386 I 0.000
FMR1_RAT Rattus norvegicus ENSRNOG00000011900 I 0.000
FMR1 Sorex araneus ENSSARG00000003475 N 0.000
FMR1 Spermophilus tridecemlineatus ENSSTOG00000003260 N 0.000
FMR1 Sus scrofa ENSSSCG00000012727 I 0.000
FMR1 Taeniopygia guttata ENSTGUG00000004735 I 0.000
FMR1 Takifugu rubripes ENSTRUG00000005362 N 0.000
FMR1 Tarsius syrichta ENSTSYG00000014392 N 0.000
FXR1 Tupaia belangeri ENSTBEG00000007370 N 0.000
FMR1 Tursiops truncatus ENSTTRG00000000613 I 0.000
FMR1 Vicugna pacos ENSVPAG00000008700 I 0.000
Q2KHP9 Xenopus laevis Q2KHP9 I 0.000
AAC59683 Xenopus laevis AAC59683 I 0.000
AAI12953 Xenopus laevis AAI12953 I 0.000
AAI70204 Xenopus laevis AAI70204 I 0.000
P51113 Xenopus laevis P51113 I 0.000
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.000