LOC_Os05g17540 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g17540 T11421_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g17540.1 CCHC ZF 220 237

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R010349 Ailuropoda melanoleuca Ame_R010349 N 0.000
PUF60 Anolis carolinensis ENSACAG00000001645 N 0.000
PUF60_BOVIN Bos taurus ENSBTAG00000037493 N 0.000
fgenesh2_pm.scaffold_205000003 Branchiostoma floridae fgenesh2_pm.scaffold_205000003 N 0.000
LOC100394446 Callithrix jacchus ENSCJAG00000021485 N 0.000
PUF60 Canis familiaris ENSCAFG00000001400 N 0.000
PUF60 Cavia porcellus ENSCPOG00000014613 N 0.000
puf60a Danio rerio ENSDARG00000032175 N 0.000
puf60b Danio rerio ENSDARG00000001241 N 0.000
Puf60 Dipodomys ordii ENSDORG00000004585 N 0.000
LOC100065550 Equus caballus ENSECAG00000024681 N 0.000
PUF60 Felis catus ENSFCAG00000001045 N 0.000
Q5F3W7_CHICK Gallus gallus ENSGALG00000014089 N 0.000
PUF60 Gasterosteus aculeatus ENSGACG00000001484 N 0.000
PUF60 Gorilla gorilla ENSGGOG00000004646 N 0.000
PUF60 Homo sapiens ENSG00000179950 N 0.000
ISCW004373 Ixodes scapularis ISCW004373 N 0.000
e_gw1.9.204.1 Lottia gigantea e_gw1.9.204.1 N 0.000
PUF60 Loxodonta africana ENSLAFG00000022929 N 0.000
PUF60 Macaca mulatta ENSMMUG00000013558 N 0.000
PUF60 Meleagris gallopavo ENSMGAG00000013070 N 0.000
PUF60 Microcebus murinus ENSMICG00000012226 N 0.000
PUF60 Monodelphis domestica ENSMODG00000009161 N 0.000
Puf60 Mus musculus ENSMUSG00000002524 N 0.000
ENSMLUG00000013032 Myotis lucifugus ENSMLUG00000013032 N 0.000
PUF60 Ochotona princeps ENSOPRG00000002147 N 0.000
PUF60 Ornithorhynchus anatinus ENSOANG00000006962 N 0.000
PUF60 Oryzias latipes ENSORLG00000012279 N 0.000
PUF60 Pan troglodytes ENSPTRG00000020670 N 0.000
PHUM512870 Pediculus humanus PHUM512870 I 0.000
Puf60 Rattus norvegicus ENSRNOG00000009960 N 0.000
XP_001191956.1 Strongylocentrotus purpuratus XP_001191956.1 N 0.000
XP_785572.1 Strongylocentrotus purpuratus XP_785572.1 N 0.000
PUF60 Taeniopygia guttata ENSTGUG00000012797 N 0.000
PUF60 Takifugu rubripes ENSTRUG00000008843 N 0.000
PUF60 Takifugu rubripes ENSTRUG00000005420 N 0.000
PUF60 Tarsius syrichta ENSTSYG00000011912 N 0.000
PUF60 Tetraodon nigroviridis ENSTNIG00000013675 N 0.000
PUF60 Tetraodon nigroviridis ENSTNIG00000003069 N 0.000
PUF60 Tursiops truncatus ENSTTRG00000017088 N 0.000
puf60 Xenopus tropicalis ENSXETG00000012469 N 0.000