CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os05g17540
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os05g17540
T11421_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g17540.1
CCHC ZF
220
237
LRCFECGEKGHFASKCPS
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R010349
Ailuropoda melanoleuca
Ame_R010349
N
0.000
PUF60
Anolis carolinensis
ENSACAG00000001645
N
0.000
PUF60_BOVIN
Bos taurus
ENSBTAG00000037493
N
0.000
fgenesh2_pm.scaffold_205000003
Branchiostoma floridae
fgenesh2_pm.scaffold_205000003
N
0.000
LOC100394446
Callithrix jacchus
ENSCJAG00000021485
N
0.000
PUF60
Canis familiaris
ENSCAFG00000001400
N
0.000
PUF60
Cavia porcellus
ENSCPOG00000014613
N
0.000
puf60a
Danio rerio
ENSDARG00000032175
N
0.000
puf60b
Danio rerio
ENSDARG00000001241
N
0.000
Puf60
Dipodomys ordii
ENSDORG00000004585
N
0.000
LOC100065550
Equus caballus
ENSECAG00000024681
N
0.000
PUF60
Felis catus
ENSFCAG00000001045
N
0.000
Q5F3W7_CHICK
Gallus gallus
ENSGALG00000014089
N
0.000
PUF60
Gasterosteus aculeatus
ENSGACG00000001484
N
0.000
PUF60
Gorilla gorilla
ENSGGOG00000004646
N
0.000
PUF60
Homo sapiens
ENSG00000179950
N
0.000
ISCW004373
Ixodes scapularis
ISCW004373
N
0.000
e_gw1.9.204.1
Lottia gigantea
e_gw1.9.204.1
N
0.000
PUF60
Loxodonta africana
ENSLAFG00000022929
N
0.000
PUF60
Macaca mulatta
ENSMMUG00000013558
N
0.000
PUF60
Meleagris gallopavo
ENSMGAG00000013070
N
0.000
PUF60
Microcebus murinus
ENSMICG00000012226
N
0.000
PUF60
Monodelphis domestica
ENSMODG00000009161
N
0.000
Puf60
Mus musculus
ENSMUSG00000002524
N
0.000
ENSMLUG00000013032
Myotis lucifugus
ENSMLUG00000013032
N
0.000
PUF60
Ochotona princeps
ENSOPRG00000002147
N
0.000
PUF60
Ornithorhynchus anatinus
ENSOANG00000006962
N
0.000
PUF60
Oryzias latipes
ENSORLG00000012279
N
0.000
PUF60
Pan troglodytes
ENSPTRG00000020670
N
0.000
PHUM512870
Pediculus humanus
PHUM512870
I
0.000
Puf60
Rattus norvegicus
ENSRNOG00000009960
N
0.000
XP_001191956.1
Strongylocentrotus purpuratus
XP_001191956.1
N
0.000
XP_785572.1
Strongylocentrotus purpuratus
XP_785572.1
N
0.000
PUF60
Taeniopygia guttata
ENSTGUG00000012797
N
0.000
PUF60
Takifugu rubripes
ENSTRUG00000008843
N
0.000
PUF60
Takifugu rubripes
ENSTRUG00000005420
N
0.000
PUF60
Tarsius syrichta
ENSTSYG00000011912
N
0.000
PUF60
Tetraodon nigroviridis
ENSTNIG00000013675
N
0.000
PUF60
Tetraodon nigroviridis
ENSTNIG00000003069
N
0.000
PUF60
Tursiops truncatus
ENSTTRG00000017088
N
0.000
puf60
Xenopus tropicalis
ENSXETG00000012469
N
0.000