CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
LOC_Os07g17880
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g17880
T11788_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g17880.1
CCHC ZF
102
118
PFCHDCREQGHYALNCP
LOC_Os07g17880.1
CCHC ZF
274
291
KACPRCGEIGHVASLCFT
LOC_Os07g17880.1
CCHC ZF
310
326
VTCFLCEGTNHVPKDCQ
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os12g33800
Oryza sativa
LOC_Os12g33800
N
0.942
LOC_Os08g27380
Oryza sativa
LOC_Os08g27380
N
0.885
LOC_Os08g24100
Oryza sativa
LOC_Os08g24100
N
0.923
LOC_Os08g24080
Oryza sativa
LOC_Os08g24080
N
0.923
LOC_Os08g22940
Oryza sativa
LOC_Os08g22940
N
0.923
LOC_Os08g20952
Oryza sativa
LOC_Os08g20952
N
0.904
LOC_Os08g12110
Oryza sativa
LOC_Os08g12110
N
0.942
LOC_Os07g24720
Oryza sativa
LOC_Os07g24720
N
0.885
LOC_Os06g31750
Oryza sativa
LOC_Os06g31750
N
0.942
LOC_Os08g45260
Oryza sativa
LOC_Os08g45260
N
0.942
LOC_Os09g06870
Oryza sativa
LOC_Os09g06870
N
0.923
LOC_Os09g09020
Oryza sativa
LOC_Os09g09020
N
0.904
LOC_Os12g25600
Oryza sativa
LOC_Os12g25600
N
0.942
LOC_Os12g18050
Oryza sativa
LOC_Os12g18050
N
0.942
LOC_Os11g35170
Oryza sativa
LOC_Os11g35170
N
0.981
LOC_Os10g18730
Oryza sativa
LOC_Os10g18730
N
0.808
LOC_Os10g17210
Oryza sativa
LOC_Os10g17210
N
0.774
LOC_Os10g16780
Oryza sativa
LOC_Os10g16780
N
0.981
LOC_Os09g13140
Oryza sativa
LOC_Os09g13140
N
0.981
LOC_Os09g09080
Oryza sativa
LOC_Os09g09080
N
0.962
LOC_Os06g18730
Oryza sativa
LOC_Os06g18730
N
0.942
LOC_Os05g26300
Oryza sativa
LOC_Os05g26300
N
0.904
LOC_Os05g22850
Oryza sativa
LOC_Os05g22850
N
0.942
LOC_Os04g05240
Oryza sativa
LOC_Os04g05240
N
0.923
LOC_Os03g32970
Oryza sativa
LOC_Os03g32970
N
0.885
LOC_Os03g23230
Oryza sativa
LOC_Os03g23230
N
0.923
LOC_Os02g25390
Oryza sativa
LOC_Os02g25390
N
0.962
LOC_Os02g23828
Oryza sativa
LOC_Os02g23828
N
0.981
LOC_Os01g37570
Oryza sativa
LOC_Os01g37570
N
0.942
LOC_Os01g35400
Oryza sativa
LOC_Os01g35400
N
0.923
LOC_Os01g29070
Oryza sativa
LOC_Os01g29070
N
0.923
LOC_Os04g06402
Oryza sativa
LOC_Os04g06402
N
0.981
LOC_Os04g14050
Oryza sativa
LOC_Os04g14050
N
0.942
LOC_Os04g53900
Oryza sativa
LOC_Os04g53900
N
0.923
LOC_Os05g20800
Oryza sativa
LOC_Os05g20800
N
0.942
LOC_Os05g19430
Oryza sativa
LOC_Os05g19430
N
0.942
LOC_Os05g18060
Oryza sativa
LOC_Os05g18060
N
0.942
LOC_Os05g18030
Oryza sativa
LOC_Os05g18030
N
0.923
LOC_Os05g17720
Oryza sativa
LOC_Os05g17720
N
0.942
LOC_Os05g17700
Oryza sativa
LOC_Os05g17700
N
0.904
LOC_Os05g17580
Oryza sativa
LOC_Os05g17580
N
0.962
LOC_Os05g08270
Oryza sativa
LOC_Os05g08270
N
0.904
13113.t00005
Oryza sativa
13113.t00005
N
0.962