LOC_Os10g18590 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os10g18590 T12260_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os10g18590.1 CCHC ZF 100 117
LOC_Os10g18590.1 CCHC ZF 201 218
LOC_Os10g18590.1 CCHC ZF 237 253
LOC_Os10g18590.1 CCHC ZF 309 326

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R000181 Ailuropoda melanoleuca Ame_R000181 N 0.000
ENSACAG00000003811 Anolis carolinensis ENSACAG00000003811 N 0.000
SRBD1 Bos taurus ENSBTAG00000007508 N 0.000
SRBD1 Callithrix jacchus ENSCJAG00000000727 N 0.000
SRBD1 Canis familiaris ENSCAFG00000002554 N 0.000
SRBD1 Cavia porcellus ENSCPOG00000004773 N 0.000
SRBD1 Choloepus hoffmanni ENSCHOG00000003805 N 0.000
SRBD1 Dasypus novemcinctus ENSDNOG00000018686 N 0.000
Srbd1 Dipodomys ordii ENSDORG00000010468 N 0.000
SRBD1 Echinops telfairi ENSETEG00000000739 N 0.000
LOC100068692 Equus caballus ENSECAG00000013865 N 0.000
SRBD1 Gallus gallus ENSGALG00000009990 N 0.000
SRBD1 Gorilla gorilla ENSGGOG00000005910 N 0.000
SRBD1 Homo sapiens ENSG00000068784 N 0.000
ENSMMUG00000003490 Macaca mulatta ENSMMUG00000003490 N 0.000
SRBD1 Meleagris gallopavo ENSMGAG00000010273 N 0.000
SRBD1 Microcebus murinus ENSMICG00000007835 N 0.000
Srbd1 Mus musculus ENSMUSG00000024135 N 0.000
SRBD1 Myotis lucifugus ENSMLUG00000007039 N 0.000
SRBD1 Oryctolagus cuniculus ENSOCUG00000015385 N 0.000
SRBD1 Pan troglodytes ENSPTRG00000011889 N 0.000
ENSPPYG00000012444 Pongo pygmaeus ENSPPYG00000012444 N 0.000
SRBD1 Pteropus vampyrus ENSPVAG00000001782 N 0.000
Srbd1 Rattus norvegicus ENSRNOG00000014720 N 0.000
SRBD1 Sorex araneus ENSSARG00000009740 N 0.000
SRBD1 Spermophilus tridecemlineatus ENSSTOG00000005898 N 0.000
SRBD1 Taeniopygia guttata ENSTGUG00000003878 N 0.000
SRBD1 Tarsius syrichta ENSTSYG00000012797 N 0.000
SRBD1 Tupaia belangeri ENSTBEG00000004556 N 0.000
SRBD1 Tursiops truncatus ENSTTRG00000011871 N 0.000
SRBD1 Vicugna pacos ENSVPAG00000006825 N 0.000
srbd1 Xenopus tropicalis ENSXETG00000002760 N 0.000