CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Srbd1
(
Rattus norvegicus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSRNOG00000014720
T60526_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000019895
S1
532
608
DLQVGTILTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKKRRSLGLGPGEKVEVKVLSVDIPRSRISLDL
Links
Other
S1
family RBPs
Other
Rattus norvegicus
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Srbd1
Mus musculus
ENSMUSG00000024135
N
0.961
Srbd1
Dipodomys ordii
ENSDORG00000010468
N
0.872
SRBD1
Choloepus hoffmanni
ENSCHOG00000003805
N
0.872
ENSPPYG00000012444
Pongo pygmaeus
ENSPPYG00000012444
N
0.859
SRBD1
Callithrix jacchus
ENSCJAG00000000727
N
0.859
SRBD1
Gorilla gorilla
ENSGGOG00000005910
N
0.859
ENSMMUG00000003490
Macaca mulatta
ENSMMUG00000003490
N
0.859
SRBD1
Pteropus vampyrus
ENSPVAG00000001782
N
0.859
SRBD1
Oryctolagus cuniculus
ENSOCUG00000015385
N
0.859
SRBD1
Dasypus novemcinctus
ENSDNOG00000018686
N
0.859
SRBD1
Spermophilus tridecemlineatus
ENSSTOG00000005898
N
0.859
SRBD1
Meleagris gallopavo
ENSMGAG00000010273
N
0.857
SRBD1
Taeniopygia guttata
ENSTGUG00000003878
N
0.857
LOC100068692
Equus caballus
ENSECAG00000013865
N
0.857
SRBD1
Gallus gallus
ENSGALG00000009990
N
0.857
SRBD1
Tursiops truncatus
ENSTTRG00000011871
N
0.846
SRBD1
Microcebus murinus
ENSMICG00000007835
N
0.846
SRBD1
Tarsius syrichta
ENSTSYG00000012797
N
0.846
SRBD1
Tupaia belangeri
ENSTBEG00000004556
N
0.846
SRBD1
Canis familiaris
ENSCAFG00000002554
N
0.846
SRBD1
Pan troglodytes
ENSPTRG00000011889
N
0.846
SRBD1
Sorex araneus
ENSSARG00000009740
N
0.846
Ame_R000181
Ailuropoda melanoleuca
Ame_R000181
N
0.846
SRBD1
Cavia porcellus
ENSCPOG00000004773
N
0.846
srbd1
Xenopus tropicalis
ENSXETG00000002760
N
0.846
SRBD1
Bos taurus
ENSBTAG00000007508
N
0.846
SRBD1
Homo sapiens
ENSG00000068784
N
0.846
SRBD1
Vicugna pacos
ENSVPAG00000006825
N
0.846
ENSLAFG00000004190
Loxodonta africana
ENSLAFG00000004190
N
0.833
SRBD1
Echinops telfairi
ENSETEG00000000739
N
0.833
SRBD1
Myotis lucifugus
ENSMLUG00000007039
N
0.821
ENSACAG00000003811
Anolis carolinensis
ENSACAG00000003811
N
0.795