fgenesh1_pg.C_scaffold_34000074 (Phytophthora ramorum)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_34000074 T13932_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_34000074 CCHC ZF 304 321

Links

Other CCHC ZF family RBPs
Other Phytophthora ramorum RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_117000017 Phytophthora ramorum fgenesh1_pg.C_scaffold_117000017 N 0.944
fgenesh1_pg.C_scaffold_73000019 Phytophthora ramorum fgenesh1_pg.C_scaffold_73000019 N 0.944
fgenesh1_pg.C_scaffold_30000027 Phytophthora ramorum fgenesh1_pg.C_scaffold_30000027 N 0.889
fgenesh1_pg.C_scaffold_280000003 Phytophthora ramorum fgenesh1_pg.C_scaffold_280000003 N 1.000
fgenesh1_pg.C_scaffold_2430000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2430000001 N 0.778
fgenesh1_pg.C_scaffold_192000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_192000001 N 1.000
fgenesh1_pg.C_scaffold_143000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_143000002 N 1.000
s_469343 Phytophthora sojae s_469343 N 0.722
s_459702 Phytophthora sojae s_459702 N 0.778
s_451625 Phytophthora sojae s_451625 N 0.778
s_450716 Phytophthora sojae s_450716 N 0.778
s_450619 Phytophthora sojae s_450619 N 0.778
s_449006 Phytophthora sojae s_449006 N 0.778
s_448013 Phytophthora sojae s_448013 N 0.833
s_447095 Phytophthora sojae s_447095 N 0.833
s_446259 Phytophthora sojae s_446259 N 0.778
s_445492 Phytophthora sojae s_445492 N 0.722
s_443729 Phytophthora sojae s_443729 N 0.778
s_439641 Phytophthora sojae s_439641 N 0.778
s_516721 Phytophthora sojae s_516721 N 0.778