CSDA (Pteropus vampyrus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSPVAG00000006740 T16990_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000006361 CSD 92 162

Links

Other CSD family RBPs
Other Pteropus vampyrus RBPs

213 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CJA09252 Caenorhabditis japonica CJA09252 N 0.000
CJA17358 Caenorhabditis japonica CJA17358 N 0.000
CJA05016 Caenorhabditis japonica CJA05016 N 0.000
CJA05578 Caenorhabditis japonica CJA05578 N 0.000
PHUM519370 Pediculus humanus PHUM519370 N 0.000
PGTG_06776 Puccinia graminis PGTG_06776 N 0.000
PGTG_16926 Puccinia graminis PGTG_16926 N 0.000
PGTG_16818 Puccinia graminis PGTG_16818 N 0.000
PGTG_13838 Puccinia graminis PGTG_13838 N 0.000
Genemark.10729_g Serpula lacrymans Genemark.10729_g N 0.000
Genemark.10975_g Serpula lacrymans Genemark.10975_g N 0.000
Genemark.4174_g Serpula lacrymans Genemark.4174_g N 0.000