CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPK
(
Tarsius syrichta
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTSYG00000001196
T19667_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
hnRNPK
M026_0.6
Homo sapiens
CCAWMCC
RNAcompete
Ray et al.(2013)
RNCMPT00026
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000001107
KH
44
104
ELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI
ENSTSYP00000001107
KH
146
209
ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKII
ENSTSYP00000001107
KH
389
451
TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL
Links
Other
KH
family RBPs
Other
Tarsius syrichta
RBPs
53 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100390255
Callithrix jacchus
ENSCJAG00000008219
N
0.000
ENSCAFG00000017850
Canis familiaris
ENSCAFG00000017850
N
0.000
ENSCPOG00000015241
Cavia porcellus
ENSCPOG00000015241
N
0.000
ENSCPOG00000022820
Cavia porcellus
ENSCPOG00000022820
N
0.000
ENSETEG00000013951
Echinops telfairi
ENSETEG00000013951
N
0.000
LOC100061605
Equus caballus
ENSECAG00000009237
N
0.000
ENSFCAG00000012074
Felis catus
ENSFCAG00000012074
N
0.000
TEX13A
Gorilla gorilla
ENSGGOG00000003783
N
0.000
TEX13A
Homo sapiens
ENSG00000133149
N
0.000
ENSLAFG00000007090
Loxodonta africana
ENSLAFG00000007090
N
0.000
TEX13B
Macaca mulatta
ENSMMUG00000007185
N
0.000
TEX13A
Macaca mulatta
ENSMMUG00000006684
N
0.000
ENSMICG00000014355
Microcebus murinus
ENSMICG00000014355
N
0.000
Tex13a
Mus musculus
ENSMUSG00000071686
N
0.000
TEX13A
Pan troglodytes
ENSPTRG00000022142
N
0.000
ENSPPYG00000020598
Pongo pygmaeus
ENSPPYG00000020598
N
0.000
ENSPVAG00000003750
Pteropus vampyrus
ENSPVAG00000003750
N
0.000
LOC100365644
Rattus norvegicus
ENSRNOG00000026712
N
0.000
ENSSARG00000009668
Sorex araneus
ENSSARG00000009668
N
0.000
ENSSSCG00000012544
Sus scrofa
ENSSSCG00000012544
N
0.000
ENSSSCG00000012565
Sus scrofa
ENSSSCG00000012565
N
0.000