cassava44075.valid.m1 (Manihot esculenta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 cassava44075.valid.m1 T20698_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava44075.valid.m1 KH 124 179
cassava44075.valid.m1 KH 216 283
cassava44075.valid.m1 KH 399 461

Links

Other KH family RBPs
Other Manihot esculenta RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884408.1 Arabidopsis lyrata fgenesh2_kg.3__422__AT3G04610.1 N 0.882
FLK Arabidopsis thaliana AT3G04610-TAIR-G N 0.877
BRADI1G14320 Brachypodium distachyon BRADI1G14320 N 0.734
BRADI4G02690 Brachypodium distachyon BRADI4G02690 N 0.723
PK22431.1 Cannabis sativa PK22431.1 N 0.905
Cucsa.133080 Cucumis sativus Cucsa.133080 N 0.941
Glyma19g43540.1 Glycine max Glyma19g43540.1 N 0.914
Glyma10g03910.1 Glycine max Glyma10g03910.1 N 0.782
Glyma03g40840.1 Glycine max Glyma03g40840.1 N 0.920
Glyma03g31670.1 Glycine max Glyma03g31670.1 N 0.798
Glyma02g15850.1 Glycine max Glyma02g15850.1 N 0.777
Glyma19g34470.1 Glycine max Glyma19g34470.1 N 0.793
LjSGA_010787.1 Lotus japonicus LjSGA_010787.1 N 0.793
MDP0000188384 Malus x domestica MDP0000188384 N 0.898
MDP0000207294 Malus x domestica MDP0000207294 N 0.898
cassava22687.valid.m1 Manihot esculenta cassava22687.valid.m1 N 0.957
mgf016264m Mimulus guttatus mgf016264m N 0.797
mgf012123m Mimulus guttatus mgf012123m N 0.866
BGIOSIBCE012177 Oryza indica BGIOSIBCE012177 N 0.715
LOC_Os12g40560 Oryza sativa LOC_Os12g40560 N 0.753
LOC_Os03g42900 Oryza sativa LOC_Os03g42900 N 0.738
PDK_20s1341671g001 Phoenix dactylifera PDK_20s1341671g001 N 0.704
gw1.51.212.1 Physcomitrella patens gw1.51.212.1 N 0.710
B9MZB2_POPTR Populus trichocarpa POPTR_0005s05790 N 0.952
B9I5K7_POPTR Populus trichocarpa POPTR_0013s04030 N 0.968
ppa003484m Prunus persica ppa003484m N 0.947
29680.m001659 Ricinus communis 29680.m001659 N 0.979
GSVIVG00000758001 Vitis vinifera GSVIVG00000758001 N 0.782
GSVIVG00036237001 Vitis vinifera GSVIVG00036237001 N 0.941
GRMZM2G417223 Zea mays GRMZM2G417223 N 0.747
GRMZM2G130095 Zea mays GRMZM2G130095 N 0.703