CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1Plus.C_20041
(
Sporobolomyces roseus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
estExt_Genewise1Plus.C_20041
T20961_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_20041
KH
176
232
FVKRRQRLLGPGGSTLKAIELLTQCYVLVQGNTVAAMGGHKGLKEVRKIVIDCMKNI
Links
Other
KH
family RBPs
Other
Sporobolomyces roseus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK22510.1
Cannabis sativa
PK22510.1
N
0.000
LbrM30_V2.3000
Leishmania braziliensis
LbrM30_V2.3000
N
0.000
LinJ30_V3.3050
Leishmania infantum
LinJ30_V3.3050
N
0.000
LmjF30.3020
Leishmania major
LmjF30.3020
N
0.000
LmxM29.3020
Leishmania mexicana
LmxM29.3020
N
0.000
MDP0000130613
Malus x domestica
MDP0000130613
N
0.000
MDP0000221204
Malus x domestica
MDP0000221204
N
0.000
Tc00.1047053506943.120
Trypanosoma cruzi
Tc00.1047053506943.120
N
0.000
TvY486_0603770
Trypanosoma vivax
TvY486_0603770
N
0.000