CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q9IA00
(
Xenopus laevis
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
Q9IA00
T22559_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q9IA00
KH
66
118
GKSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKENVKEAKERI
Q9IA00
KH
130
195
TLKMDVLHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
Q9IA00
KH
220
264
NSPTIQQISQTYNLTVSFKQRSRVYGATVIVRGSQNNTSAVKEGT
Q9IA00
KH
282
344
STQLDIAAQHHLFMMGRNGCNIKHIMQRTGAQIHFPDPNNPLKKSTVYLQGTIDSVCLARQYL
Q9IA00
SAM
863
923
KGSDLPELFSKLGLGKYTDIFQQQEIDLQTFLTLTDQDLKELGISTFGARRKMLLAISELN
Links
Other
KH,SAM
family RBPs
Other
Xenopus laevis
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_kg.C_140159
Agaricus bisporus
estExt_fgenesh2_kg.C_140159
N
0.000
Ame_R008665
Ailuropoda melanoleuca
Ame_R008665
N
0.000
AMAG_00661
Allomyces macrogynus
AMAG_00661
N
0.000
AB03196.1
Alternaria brassicicola
AB03196.1
N
0.000
PPIL4
Anolis carolinensis
ENSACAG00000006936
N
0.000
ARB_04672
Arthroderma benhamiae
ARB_04672
N
0.000
AFLA_071340
Aspergillus flavus
CADAFLAG00008558
N
0.000
AO090038000594
Aspergillus oryzae
CADAORAG00009343
N
0.000
A6QP53_BOVIN
Bos taurus
ENSBTAG00000016980
N
0.000
BC1G_10007
Botrytis cinerea
BC1G_10007
N
0.000
Q6JDI1_CANFA
Canis familiaris
ENSCAFG00000000379
N
0.000
CAOG_07850
Capsaspora owczarzaki
CAOG_07850
N
0.000
PPIL4
Cavia porcellus
ENSCPOG00000014614
N
0.000
estExt_fgenesh1_kg.C_170006
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_170006
N
0.000
GLRG_06614
Colletotrichum graminicola
GLRG_06614
N
0.000
CNBG_1409
Cryptococcus neoformans
CNBG_1409
N
0.000
PPIL4
Equus caballus
ENSECAG00000021819
N
0.000
FGSG_04479
Fusarium graminearum
FGSG_04479
N
0.000
FOXG_13736
Fusarium oxysporum
FOXG_13736
N
0.000
FVEG_11166
Fusarium verticillioides
FVEG_11166
N
0.000
PPIL4
Gallus gallus
ENSGALG00000012364
N
0.000
PPIL4
Gasterosteus aculeatus
ENSGACG00000006639
N
0.000
PPIL4
Gorilla gorilla
ENSGGOG00000009686
N
0.000
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA
Heterobasidion annosum
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA
N
0.000
PPIL4
Homo sapiens
ENSG00000131013
N
0.000
e_gww1.4.788.1
Laccaria bicolor
e_gww1.4.788.1
N
0.000
PPIL4
Loxodonta africana
ENSLAFG00000026804
N
0.000
PPIL4
Macaca mulatta
ENSMMUG00000023067
N
0.000
MGG_10681
Magnaporthe oryzae
MGG_10681
N
0.000
estExt_fgenesh1_kg.C_40083
Melampsora laricis populina
estExt_fgenesh1_kg.C_40083
N
0.000
PPIL4
Meleagris gallopavo
ENSMGAG00000012596
N
0.000
PPIL4
Microcebus murinus
ENSMICG00000006287
N
0.000
MCYG_06073
Microsporum canis
MCYG_06073
N
0.000
MGYG_05886
Microsporum gypseum
MGYG_05886
N
0.000
PPIL4
Monodelphis domestica
ENSMODG00000016825
N
0.000
Ppil4
Mus musculus
ENSMUSG00000015757
N
0.000
estExt_Genewise1.C_30053
Myceliophthora thermophila
estExt_Genewise1.C_30053
N
0.000
estExt_Genewise1Plus.C_chr_40303
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_40303
N
0.000
PPIL4
Myotis lucifugus
ENSMLUG00000002766
N
0.000
fgenesh1_pm.sca_11_chr8_3_0000173
Nectria haematococca
fgenesh1_pm.sca_11_chr8_3_0000173
N
0.000
e_gw.42.57.1
Nematostella vectensis
e_gw.42.57.1
N
0.000
NCU10166
Neurospora crassa
NCU10166
N
0.000
estExt_Genewise1Plus.C_12820
Neurospora discreta
estExt_Genewise1Plus.C_12820
N
0.000
gw1.1.256.1
Neurospora tetrasperma
gw1.1.256.1
N
0.000
PPIL4
Ochotona princeps
ENSOPRG00000005619
N
0.000
ENSOANG00000001063
Ornithorhynchus anatinus
ENSOANG00000001063
N
0.000
PPIL4
Oryctolagus cuniculus
ENSOCUG00000007696
N
0.000
PPIL4
Otolemur garnettii
ENSOGAG00000014153
N
0.000
PPIL4
Pan troglodytes
ENSPTRG00000018692
N
0.000
PHUM268300
Pediculus humanus
PHUM268300
N
0.000
Pc21g11960
Penicillium chrysogenum
Pc21g11960
N
0.000
EAT81165.2
Phaeosphaeria nodorum
EAT81165.2
N
0.000
e_gww2.22.65.1
Phanerochaete chrysosporium
e_gww2.22.65.1
N
0.000
e_gw1.20.215.1
Phycomyces blakesleeanus
e_gw1.20.215.1
N
0.000
e_gw1.4.2113.1
Pleurotus ostreatus
e_gw1.4.2113.1
N
0.000
Pa_2_13850
Podospora anserina
Pa_2_13850
N
0.000
estExt_fgenesh3_pg.C_910016
Postia placenta
estExt_fgenesh3_pg.C_910016
N
0.000
PPIL4
Procavia capensis
ENSPCAG00000008203
N
0.000
PPIL4
Pteropus vampyrus
ENSPVAG00000000746
N
0.000
PGTG_10482
Puccinia graminis
PGTG_10482
N
0.000
PGTG_14680
Puccinia graminis
PGTG_14680
N
0.000
PTRG_04608
Pyrenophora tritici repentis
PTRG_04608
N
0.000
Ppil4
Rattus norvegicus
ENSRNOG00000015552
N
0.000
PTSG_07932
Salpingoeca rosetta
PTSG_07932
N
0.000
fgenesh1_pm.C_scaffold_1000049
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000049
N
0.000
cyp6
Schizosaccharomyces pombe
SPBC17G9.05
N
0.000
fgenesh2_pm.4_#_1016
Serpula lacrymans
fgenesh2_pm.4_#_1016
N
0.000
PPIL4
Sorex araneus
ENSSARG00000011244
N
0.000
SPPG_03169
Spizellomyces punctatus
SPPG_03169
N
0.000
SNOG_11457
Stagonospora nodorum
SNOG_11457
N
0.000
PPIL4
Taeniopygia guttata
ENSTGUG00000010655
N
0.000
PPIL4
Takifugu rubripes
ENSTRUG00000006670
N
0.000
PPIL4
Tetraodon nigroviridis
ENSTNIG00000002706
N
0.000
estExt_Genewise1Plus.C_11662
Tremella mesenterica
estExt_Genewise1Plus.C_11662
N
0.000
e_gw1.11.236.1
Trichoderma atroviride
e_gw1.11.236.1
N
0.000
estExt_GeneWisePlus.C_270056
Trichoderma reesei
estExt_GeneWisePlus.C_270056
N
0.000
fgenesh1_pm.C_scaffold_3000471
Trichoderma virens
fgenesh1_pm.C_scaffold_3000471
N
0.000
TEQG_07016
Trichophyton equinum
TEQG_07016
N
0.000
TERG_06028
Trichophyton rubrum
TERG_06028
N
0.000
TRV_03115
Trichophyton verrucosum
TRV_03115
N
0.000
fgeneshTA2_pg.C_scaffold_8000290
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_8000290
N
0.000
GSTUMT00009813001
Tuber melanosporum
GSTUMT00009813001
N
0.000
PPIL4
Tursiops truncatus
ENSTTRG00000006014
N
0.000
UM03490
Ustilago maydis
UM03490
N
0.000
VDBG_02138
Verticillium albo atrum
VDBG_02138
N
0.000
VDAG_02606
Verticillium dahliae
VDAG_02606
N
0.000
PPIL4
Vicugna pacos
ENSVPAG00000005157
N
0.000
ppil4
Xenopus tropicalis
ENSXETG00000021385
N
0.000