CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pm.C_scaffold_3000471
(
Trichoderma virens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh1_pm.C_scaffold_3000471
T52077_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_3000471
RRM
253
323
LFVCKLNPVTQDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEVAYTKMQDVLIDDRRIH
Links
Other
RRM
family RBPs
Other
Trichoderma virens
RBPs
176 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_GeneWisePlus.C_270056
Trichoderma reesei
estExt_GeneWisePlus.C_270056
N
0.972
e_gw1.11.236.1
Trichoderma atroviride
e_gw1.11.236.1
N
0.972
fgenesh1_pm.sca_11_chr8_3_0000173
Nectria haematococca
fgenesh1_pm.sca_11_chr8_3_0000173
N
0.958
FVEG_11166
Fusarium verticillioides
FVEG_11166
N
0.944
FGSG_04479
Fusarium graminearum
FGSG_04479
N
0.944
FOXG_13736
Fusarium oxysporum
FOXG_13736
N
0.944
GLRG_06614
Colletotrichum graminicola
GLRG_06614
N
0.915
VDBG_02138
Verticillium albo atrum
VDBG_02138
N
0.901
MGG_10681
Magnaporthe oryzae
MGG_10681
N
0.887
VDAG_02606
Verticillium dahliae
VDAG_02606
N
0.887
Pa_2_13850
Podospora anserina
Pa_2_13850
N
0.887
estExt_Genewise1Plus.C_12820
Neurospora discreta
estExt_Genewise1Plus.C_12820
N
0.887
NCU10166
Neurospora crassa
NCU10166
N
0.887
gw1.1.256.1
Neurospora tetrasperma
gw1.1.256.1
N
0.887
CHGG_06839
Chaetomium globosum
CHGG_06839
N
0.859
BC1G_10007
Botrytis cinerea
BC1G_10007
N
0.859
estExt_Genewise1.C_30053
Myceliophthora thermophila
estExt_Genewise1.C_30053
N
0.845
MGYG_05886
Microsporum gypseum
MGYG_05886
N
0.845
MCYG_06073
Microsporum canis
MCYG_06073
N
0.845
estExt_Genewise1Plus.C_61472
Cryphonectria parasitica
estExt_Genewise1Plus.C_61472
N
0.845
SNOG_11457
Stagonospora nodorum
SNOG_11457
N
0.831
TEQG_07016
Trichophyton equinum
TEQG_07016
N
0.831
ARB_04672
Arthroderma benhamiae
ARB_04672
N
0.831
EAT81165.2
Phaeosphaeria nodorum
EAT81165.2
N
0.831
TERG_06028
Trichophyton rubrum
TERG_06028
N
0.831
PTRG_04608
Pyrenophora tritici repentis
PTRG_04608
N
0.831
estExt_Genewise1.C_23809
Thielavia terrestris
estExt_Genewise1.C_23809
N
0.831
TRV_03115
Trichophyton verrucosum
TRV_03115
N
0.831
ANIA_09095
Aspergillus nidulans
CADANIAG00009519
N
0.831
estExt_Genewise1Plus.C_chr_40303
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_40303
N
0.831
AB03196.1
Alternaria brassicicola
AB03196.1
N
0.817
fgenesh1_pm.C_scaffold_9000117
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_9000117
N
0.817
estExt_fgenesh1_kg.C_170006
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_170006
N
0.817
AFUA_7G02170
Aspergillus fumigatus
CADAFUAG00001177
N
0.803
An12g00490
Aspergillus niger
CADANGAG00009498
N
0.803
HCAG_04417
Histoplasma capsulatum
HCAG_04417
N
0.803
cyp6
Schizosaccharomyces pombe
SPBC17G9.05
N
0.803
AFLA_071340
Aspergillus flavus
CADAFLAG00008558
N
0.803
e_gw.42.57.1
Nematostella vectensis
e_gw.42.57.1
N
0.803
NFIA_114890
Neosartorya fischeri
CADNFIAG00010434
N
0.803
AO090038000594
Aspergillus oryzae
CADAORAG00009343
N
0.803
PTSG_07932
Salpingoeca rosetta
PTSG_07932
N
0.803
ATEG_01850
Aspergillus terreus
CADATEAG00001841
N
0.803
PABG_01156
Paracoccidioides brasiliensis
PABG_01156
N
0.803
ACLA_065360
Aspergillus clavatus
CADACLAG00006149
N
0.803
UREG_02113
Uncinocarpus reesii
UREG_02113
N
0.803
estExt_Genewise1Plus.C_11662
Tremella mesenterica
estExt_Genewise1Plus.C_11662
N
0.803
Pc21g11960
Penicillium chrysogenum
Pc21g11960
N
0.803
fgenesh1_pm.00868_#_101
Aspergillus carbonarius
fgenesh1_pm.00868_#_101
N
0.803
PMAA_010740
Penicillium marneffei
PMAA_010740
N
0.803
GSTUMT00009813001
Tuber melanosporum
GSTUMT00009813001
N
0.803
CPSG_09333
Coccidioides posadasii
CPSG_09333
N
0.803
BGIBMGA008977
Bombyx mori
BGIBMGA008977
N
0.803
CIMG_07762
Coccidioides immitis
CIMG_07762
N
0.803
BDBG_04009
Blastomyces dermatitidis
BDBG_04009
N
0.803
SJAG_00470
Schizosaccharomyces japonicus
SJAG_00470
N
0.789
fgeneshTA2_pg.C_scaffold_8000290
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_8000290
N
0.789
SPPG_03169
Spizellomyces punctatus
SPPG_03169
N
0.789
PPIL4
Takifugu rubripes
ENSTRUG00000006670
N
0.775
WUBG_04730
Wuchereria bancrofti
WUBG_04730
N
0.775
gw1.13.70.1
Lottia gigantea
gw1.13.70.1
N
0.775
Aqu1.223583
Amphimedon queenslandica
Aqu1.223583
N
0.775
PredSwiss_ASS2010_933.2
Pneumocystis carinii
PredSwiss_ASS2010_933.2
N
0.775
PredSwiss_CON599.3
Pneumocystis carinii
PredSwiss_CON599.3
N
0.775
CPIJ000912
Culex quinquefasciatus
CPIJ000912
N
0.775
PPIL4
Tetraodon nigroviridis
ENSTNIG00000002706
N
0.775
AAEL005541
Aedes aegypti
AAEL005541
N
0.775
AAEL005690
Aedes aegypti
AAEL005690
N
0.775
CpipJ_CPIJ000912
Culex pipiens
CpipJ_CPIJ000912
N
0.775
SPOG_01415
Schizosaccharomyces cryophilus
SPOG_01415
N
0.775
CNBG_1409
Cryptococcus neoformans
CNBG_1409
N
0.775
e_gw1.6.80.1
Monosiga brevicollis
e_gw1.6.80.1
N
0.761
GJ23668
Drosophila virilis
FBgn0210765
N
0.761
GI24038
Drosophila mojavensis
FBgn0146761
N
0.761
PHUM268300
Pediculus humanus
PHUM268300
N
0.761
PPIL4
Meleagris gallopavo
ENSMGAG00000012596
N
0.761
PPIL4
Gallus gallus
ENSGALG00000012364
N
0.761
LOAG_08216
Loa loa
LOAG_08216
N
0.761
ENSOANG00000001063
Ornithorhynchus anatinus
ENSOANG00000001063
N
0.761
GF18772
Drosophila ananassae
FBgn0095789
N
0.761
GH18460
Drosophila grimshawi
FBgn0125927
N
0.761
SOCG_02586
Schizosaccharomyces octosporus
SOCG_02586
N
0.761
AGAP008136
Anopheles gambiae
AGAP008136
N
0.761
amel4_ncbi_hmm11961
Apis mellifera
amel4_ncbi_hmm11961
N
0.761
amel4_ncbi_hmm35613
Apis mellifera
amel4_ncbi_hmm35613
N
0.761
estExt_fgenesh2_pm.C_1170007
Branchiostoma floridae
estExt_fgenesh2_pm.C_1170007
N
0.761
UM03490
Ustilago maydis
UM03490
N
0.761
nasonia_NCBI_hmm783174
Nasonia vitripennis
nasonia_NCBI_hmm783174
N
0.761
PPIL4
Otolemur garnettii
ENSOGAG00000014153
N
0.746
ppil4
Xenopus tropicalis
ENSXETG00000021385
N
0.746
PPIL4
Oryctolagus cuniculus
ENSOCUG00000007696
N
0.746
PPIL4
Vicugna pacos
ENSVPAG00000005157
N
0.746
PPIL4
Macaca mulatta
ENSMMUG00000023067
N
0.746
PPIL4
Monodelphis domestica
ENSMODG00000016825
N
0.746
Ppil4
Mus musculus
ENSMUSG00000015757
N
0.746
PPIL4
Ochotona princeps
ENSOPRG00000005619
N
0.746
PPIL4
Oryzias latipes
ENSORLG00000015310
N
0.746
PPIL4
Tursiops truncatus
ENSTTRG00000006014
N
0.746
CG5808
Drosophila melanogaster
FBgn0027617
N
0.746
PPIL4
Sorex araneus
ENSSARG00000011244
N
0.746
GA26948-RA
Drosophila pseudoobscura
FBgn0248319
N
0.746
Ppil4
Rattus norvegicus
ENSRNOG00000015552
N
0.746
GL13859
Drosophila persimilis
FBgn0151464
N
0.746
PPIL4
Taeniopygia guttata
ENSTGUG00000010655
N
0.746
PPIL4
Procavia capensis
ENSPCAG00000008203
N
0.746
PPIL4
Pan troglodytes
ENSPTRG00000018692
N
0.746
PPIL4
Pteropus vampyrus
ENSPVAG00000000746
N
0.746
PPIL4
Myotis lucifugus
ENSMLUG00000002766
N
0.746
fgenesh1_pm.C_scaffold_1000049
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000049
N
0.746
estExt_Genewise1Plus.C_40585
Mucor circinelloides
estExt_Genewise1Plus.C_40585
N
0.746
estExt_fgenesh2_kg.C_140159
Agaricus bisporus
estExt_fgenesh2_kg.C_140159
N
0.746
PPIL4
Microcebus murinus
ENSMICG00000006287
N
0.746
Ame_R008665
Ailuropoda melanoleuca
Ame_R008665
N
0.746
estExt_Genewise1Plus.C_40228
Batrachochytrium dendrobatidis
estExt_Genewise1Plus.C_40228
N
0.746
Smp_165540
Schistosoma mansoni
Smp_165540
N
0.746
AMAG_02172
Allomyces macrogynus
AMAG_02172
N
0.746
AMAG_00661
Allomyces macrogynus
AMAG_00661
N
0.746
RO3G_06974
Rhizopus oryzae
RO3G_06974
N
0.746
estExt_fgenesh3_pg.C_910016
Postia placenta
estExt_fgenesh3_pg.C_910016
N
0.746
e_gw1.20.215.1
Phycomyces blakesleeanus
e_gw1.20.215.1
N
0.746
e_gw1.4.2113.1
Pleurotus ostreatus
e_gw1.4.2113.1
N
0.746
PPIL4
Anolis carolinensis
ENSACAG00000006936
N
0.746
PPIL4
Homo sapiens
ENSG00000131013
N
0.746
PPIL4
Gorilla gorilla
ENSGGOG00000009686
N
0.746
PPIL4
Loxodonta africana
ENSLAFG00000026804
N
0.746
ENSCSAVG00000010619
Ciona savignyi
ENSCSAVG00000010619
N
0.746
PPIL4
Equus caballus
ENSECAG00000021819
N
0.746
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.746
Q6JDI1_CANFA
Canis familiaris
ENSCAFG00000000379
N
0.746
A6QP53_BOVIN
Bos taurus
ENSBTAG00000016980
N
0.746
PPIL4
Cavia porcellus
ENSCPOG00000014614
N
0.746
e_gww2.22.65.1
Phanerochaete chrysosporium
e_gww2.22.65.1
N
0.732
e_gww1.4.788.1
Laccaria bicolor
e_gww1.4.788.1
N
0.732
GE10772
Drosophila yakuba
FBgn0228614
N
0.732
GD18267
Drosophila simulans
FBgn0189800
N
0.732
estExt_fgenesh1_kg.C_40083
Melampsora laricis populina
estExt_fgenesh1_kg.C_40083
N
0.732
CBN08292
Caenorhabditis brenneri
CBN08292
N
0.732
GM23461
Drosophila sechellia
FBgn0178328
N
0.732
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA
Heterobasidion annosum
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA
N
0.732
CBG12494
Caenorhabditis briggsae
CBG12494
N
0.732
PGTG_10482
Puccinia graminis
PGTG_10482
N
0.732
ppil4
Danio rerio
ENSDARG00000043854
N
0.732
PPIL4
Erinaceus europaeus
ENSEEUG00000000959
N
0.732
GG12319
Drosophila erecta
FBgn0104609
N
0.732
gwEuk.12.143.1
Ostreococcus lucimarinus
gwEuk.12.143.1
N
0.732
Sjc_0091550
Schistosoma japonicum
Sjc_0091550
N
0.732
PPIL4
Gasterosteus aculeatus
ENSGACG00000006639
N
0.732
PPIL4
Callithrix jacchus
ENSCJAG00000019613
N
0.722
PTTG_06854
Puccinia triticina
PTTG_06854
N
0.718
DGIL_AUG5s502g5t1
Acyrtosiphon pisum
DGIL_AUG5s502g5t1
N
0.718
XP_787384.2
Strongylocentrotus purpuratus
XP_787384.2
N
0.718
Minc10084
Meloidogyne incognita
Minc10084
N
0.718
fgenesh2_pm.4_#_1016
Serpula lacrymans
fgenesh2_pm.4_#_1016
N
0.718
EDO07903.1
Babesia bovis
EDO07903.1
N
0.718
XP_001180629.1
Strongylocentrotus purpuratus
XP_001180629.1
N
0.718
estExt_Genewise1.C_180101
Capitella teleta
estExt_Genewise1.C_180101
N
0.718
XP_001192414.1
Strongylocentrotus purpuratus
XP_001192414.1
N
0.718
XP_782627.2
Strongylocentrotus purpuratus
XP_782627.2
N
0.718
e_gw1.4.370.1
Sporobolomyces roseus
e_gw1.4.370.1
N
0.718
sig-7
Caenorhabditis elegans
F39H2.2
N
0.718
PPIL4
Spermophilus tridecemlineatus
ENSSTOG00000013980
N
0.718
e_gw1.6.1078.1
Selaginella moellendorfii
e_gw1.6.1078.1
N
0.718
Chro.80276
Cryptosporidium hominis
Chro.80276
N
0.718
83285
Helobdella robusta
83285
N
0.718
CJA06296
Caenorhabditis japonica
CJA06296
N
0.718
cgd8_2350
Cryptosporidium parvum
cgd8_2350
N
0.718
CRE29496
Caenorhabditis remanei
CRE29496
N
0.718
CMU_026350
Cryptosporidium muris
CMU_026350
N
0.718
EuGene.1200010297
Ostreococcus RCC809
EuGene.1200010297
N
0.704
GK13166
Drosophila willistoni
FBgn0215175
N
0.704
NCLIV_045550
Neospora caninum
NCLIV_045550
N
0.704
PGTG_14680
Puccinia graminis
PGTG_14680
N
0.704
TGVEG_068650
Toxoplasma gondii
TGVEG_068650
N
0.704
TGME49_027850
Toxoplasma gondii
TGME49_027850
N
0.704
TGGT1_083150
Toxoplasma gondii
TGGT1_083150
N
0.704
gw1.12.00.150.1
Ostreococcus tauri
gw1.12.00.150.1
N
0.704