CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CC1G_13772
(
Coprinopsis cinerea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CC1G_13772
T28572_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CC1G_13772T0
RRM
87
157
LHVSGLSHRVDSRDLETAFAKIGRVQKASVMYDPHTRESRGFGFVTMETTEEAEAAISSLNGTELMGKIIT
Links
Other
RRM
family RBPs
Other
Coprinopsis cinerea
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_kg.C_10072
Agaricus bisporus
estExt_fgenesh2_kg.C_10072
N
0.732
estExt_fgenesh2_pm.C_10107
Heterobasidion annosum
estExt_fgenesh2_pm.C_10107
N
0.803
gww1.1.839.1
Laccaria bicolor
gww1.1.839.1
N
0.817
estExt_genemark.C_31602
Pleurotus ostreatus
estExt_genemark.C_31602
N
0.845
estExt_fgenesh3_pg.C_1090054
Postia placenta
estExt_fgenesh3_pg.C_1090054
N
0.746
estExt_Genewise1.C_1410078
Postia placenta
estExt_Genewise1.C_1410078
N
0.761
gw1.16.51.1
Schizophyllum commune
gw1.16.51.1
N
0.803
estExt_fgenesh2_pg.C_10668
Serpula lacrymans
estExt_fgenesh2_pg.C_10668
N
0.817