CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.16.51.1
(
Schizophyllum commune
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.16.51.1
T53130_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.16.51.1
RRM
6
76
LHVSGLSHKIDTRDLEAAFKEFGRVQKASVMYDPHTRESRGFGFVTMESPEEAEAAVNGLNGTELQGKIIR
Links
Other
RRM
family RBPs
Other
Schizophyllum commune
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_13772
Coprinopsis cinerea
CC1G_13772
N
0.803
gww1.1.839.1
Laccaria bicolor
gww1.1.839.1
N
0.789
estExt_genemark.C_31602
Pleurotus ostreatus
estExt_genemark.C_31602
N
0.761
estExt_fgenesh2_pm.C_10107
Heterobasidion annosum
estExt_fgenesh2_pm.C_10107
N
0.761
estExt_Genewise1.C_1410078
Postia placenta
estExt_Genewise1.C_1410078
N
0.746
estExt_fgenesh2_pg.C_10668
Serpula lacrymans
estExt_fgenesh2_pg.C_10668
N
0.746
estExt_fgenesh3_pg.C_1090054
Postia placenta
estExt_fgenesh3_pg.C_1090054
N
0.746