CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGUG_03842
(
Candida guilliermondii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PGUG_03842
T30102_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGUT_03842
RRM
167
217
VFVGNVPATVVTSKSTQKQFKKLFSEVGPVESVRFRSIAFGEALPRKAAFA
PGUT_03842
RRM
219
258
KKLHGARDSVNAYVVYKEKTPSRNAVSRLNAREFDHHHLR
PGUT_03842
RRM
274
342
IFVGNLDFEASEEELWRYFNSHTDNDVESVRVVRDSKTNLGKGFALVQFKDSLSVNKCILLNDKPMSKE
Links
Other
RRM
family RBPs
Other
Candida guilliermondii
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CLUG_01085
Candida lusitaniae
CLUG_01085
N
0.719
DEHA0C17402g
Debaryomyces hansenii
DEHA0C17402g
N
0.716