CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DEHA0C17402g
(
Debaryomyces hansenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DEHA0C17402g
T29169_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DEHA0C17402g.1
RRM
161
212
VFVGNVNASVVGSKPMYKKFKKLFSQYGKIQSIRFRSISFDDAVPRKVAFAK
DEHA0C17402g.1
RRM
212
252
KKKLHSSRDTLNAYVVFAEKEPSLKCVPKLNATEFEHAHLR
DEHA0C17402g.1
RRM
268
336
IFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIRDAKTNVGKGFALVQFKDTLSVNKSLLLNDKPMSAE
Links
Other
RRM
family RBPs
Other
Debaryomyces hansenii
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGUG_03842
Candida guilliermondii
PGUG_03842
N
0.716
CLUG_01085
Candida lusitaniae
CLUG_01085
N
0.710
CTRG_01565
Candida tropicalis
CTRG_01565
N
0.709