CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTRG_00597
(
Pyrenophora tritici repentis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PTRG_00597
T30198_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTRT_00597
RRM
161
231
IVIKNIPFAVKKEQLVNLMTELRLPLPYAFNYHFDNGVFRGLAFANFTTAEETAAVIESMNHFELNGRKLR
Links
Other
RRM
family RBPs
Other
Pyrenophora tritici repentis
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZC3H3
Bos taurus
ENSBTAG00000021472
N
0.000
ZC3H3
Callithrix jacchus
ENSCJAG00000021439
N
0.000
LOC100065889
Equus caballus
ENSECAG00000012556
N
0.000
ZC3H3
Homo sapiens
ENSG00000014164
N
0.000
ZC3H3
Macaca mulatta
ENSMMUG00000019255
N
0.000
Gm7353
Mus musculus
ENSMUSG00000055452
N
0.000
ZC3H3
Pan troglodytes
ENSPTRG00000020655
N
0.000
ENSPPYG00000018935
Pongo pygmaeus
ENSPPYG00000018935
N
0.000
ZC3H3
Pteropus vampyrus
ENSPVAG00000005979
N
0.000
Zc3h3
Rattus norvegicus
ENSRNOG00000007684
N
0.000
ZC3H3
Spermophilus tridecemlineatus
ENSSTOG00000004358
N
0.000