CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
DGIL_AUG5s3525g11t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s3525g11t1
T32055_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
0.727
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.701
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s3525g11t1
RRM
111
187
VFVVGLPNRISEAETLKKHEYFGKFGKILKVVINQSTSYIGTQGPSASAYVTYSRCEDALRAILAVNNVIIDNRVLK
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ADR062W
Ashbya gossypii
ADR062W
N
0.000
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.000
orf19.7385
Candida albicans
orf19.7385
N
0.000
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.000
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.000
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.000
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.000
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.000
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.000
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.000
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.000
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.000
estExt_fgenesh1_pg.C_120231
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_120231
N
0.000
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.000
NCU05007
Neurospora crassa
NCU05007
N
0.000
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.000
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.000
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.000
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.000
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.000
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.000
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.000
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.000
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.000
SPCC1739.01
Schizosaccharomyces pombe
SPCC1739.01
N
0.000
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.000
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.000
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.000
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.000
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.000
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.000