CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s3525g11t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s3525g11t1
T32055_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
0.727
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.701
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s3525g11t1
RRM
111
187
VFVVGLPNRISEAETLKKHEYFGKFGKILKVVINQSTSYIGTQGPSASAYVTYSRCEDALRAILAVNNVIIDNRVLK
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action