Cnot4 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0051716 T43095_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Cnot4
M008_0.6		 Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M008_0.6 RRM 51 127

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0079599 RRM 110 186
FBpp0079600 RRM 110 186
FBpp0079601 RRM 110 186
FBpp0079602 RRM 110 186
FBpp0079603 RRM 110 186
FBpp0079604 RRM 110 186
FBpp0293055 RRM 110 186
FBpp0293056 RRM 110 186

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GE18937 Drosophila yakuba FBgn0236309 I 1.000
GG10123 Drosophila erecta FBgn0102434 I 1.000
GD23693 Drosophila simulans FBgn0195070 I 1.000
GF15780 Drosophila ananassae FBgn0092804 I 0.987
GJ21812 Drosophila virilis FBgn0208930 I 0.974
GK18552 Drosophila willistoni FBgn0220550 I 0.974
GI18285 Drosophila mojavensis FBgn0141024 I 0.974
GH13370 Drosophila grimshawi FBgn0120846 I 0.974
AGAP009827 Anopheles gambiae AGAP009827 I 0.948
CPIJ019539 Culex quinquefasciatus CPIJ019539 I 0.935
CpipJ_CPIJ000383 Culex pipiens CpipJ_CPIJ000383 I 0.935
CpipJ_CPIJ019539 Culex pipiens CpipJ_CPIJ019539 I 0.935
CPIJ000383 Culex quinquefasciatus CPIJ000383 I 0.935
AAEL006664 Aedes aegypti AAEL006664 I 0.909
AAEL009437 Aedes aegypti AAEL009437 I 0.897
nasonia_NCBI_hmm502784 Nasonia vitripennis nasonia_NCBI_hmm502784 I 0.805
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.792
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.792
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.792
GL19177 Drosophila persimilis FBgn0156776 I 0.766
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.766
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.766
CNOT4 Danio rerio ENSDARG00000007045 I 0.740
PHUM247100 Pediculus humanus PHUM247100 I 0.740
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.727
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.727
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.727
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.727
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.727
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.727
Cnot4 Mus musculus ENSMUSG00000038784 I 0.727
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.727
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.727
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.727
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.727
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.727
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.727
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.727
CNOT4 Sorex araneus ENSSARG00000009778 I 0.727
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.727
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.727
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.727
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.727
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.727
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.727
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.727
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.727
AAH44088 Xenopus laevis AAH44088 I 0.727
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.727
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.727
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.727
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.727
CNOT4 Equus caballus ENSECAG00000020262 I 0.727
CNOT4 Homo sapiens ENSG00000080802 D 0.727
zgc:63566 Danio rerio ENSDARG00000007639 I 0.727
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.714
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.714
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.714
111136 Helobdella robusta 111136 I 0.701
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.701
ENSCING00000004364 Ciona intestinalis ENSCING00000004364 I 0.701
DGIL_AUG5s3525g11t1 Acyrtosiphon pisum DGIL_AUG5s3525g11t1 I 0.701