CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm386924
(
Nasonia vitripennis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
nasonia_NCBI_hmm386924
T32231_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm386924
RRM
276
345
VRARGLPWQSSDQDVAKFFRGLNVAKGGVALCLSAQGRRNGEALVRFVSKEHRDMALKRHKHHIDQRYIE
nasonia_NCBI_hmm386924
RRM
377
452
VRMRGLPYDCTAKQVLEFFLTGQKPCQVLDGEDGVLFVKKADGRATGDAFVLFAQEEDAAKALSKHRDCIGSRYIE
nasonia_NCBI_hmm386924
RRM
501
574
VRLRGLPYEALVEHILEFMGEHSKNIEYQGVHMVFNAQGQPSGEAFIQMNSEAAAYVCASQRHHRYMIYGKKQR
Links
Other
RRM
family RBPs
Other
Nasonia vitripennis
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R008895
Ailuropoda melanoleuca
Ame_R008895
N
0.000
ZRANB3
Bos taurus
ENSBTAG00000026842
N
0.000
ZRANB3
Callithrix jacchus
ENSCJAG00000011678
N
0.000
ENSCJAG00000016365
Callithrix jacchus
ENSCJAG00000016365
N
0.000
ZRANB3
Canis familiaris
ENSCAFG00000005054
N
0.000
ZRANB3
Choloepus hoffmanni
ENSCHOG00000011223
N
0.000
ZRANB3
Dasypus novemcinctus
ENSDNOG00000013613
N
0.000
ZRANB3
Echinops telfairi
ENSETEG00000011048
N
0.000
ZRANB3
Equus caballus
ENSECAG00000011232
N
0.000
ZRANB3
Gorilla gorilla
ENSGGOG00000003782
N
0.000
ZRANB3
Loxodonta africana
ENSLAFG00000015733
N
0.000
ZRANB3
Macaca mulatta
ENSMMUG00000000765
N
0.000
ZRANB3
Microcebus murinus
ENSMICG00000013893
N
0.000
ZRANB3
Oryctolagus cuniculus
ENSOCUG00000007243
N
0.000
ZRANB3
Pan troglodytes
ENSPTRG00000012492
N
0.000
ZRANB3
Sus scrofa
ENSSSCG00000015694
N
0.000
ZRANB3
Tursiops truncatus
ENSTTRG00000003932
N
0.000