BGIOSIBCE013412 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE013412 T32957_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE013412 RRM 21 88

Links

Other RRM family RBPs
Other Oryza indica RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.824
AAEL005909 Aedes aegypti AAEL005909 N 0.824
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.779
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.824
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.779
AGAP002780 Anopheles gambiae AGAP002780 N 0.824
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.809
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.754
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.884
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.884
32497 Aureococcus anophagefferens 32497 N 0.784
EDO06533.1 Babesia bovis EDO06533.1 N 0.765
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.779
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.956
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.794
CBN08400 Caenorhabditis brenneri CBN08400 N 0.706
CBG06987 Caenorhabditis briggsae CBG06987 N 0.706
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.706
CJA01433 Caenorhabditis japonica CJA01433 N 0.721
CRE22109 Caenorhabditis remanei CRE22109 N 0.706
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.779
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.779
PK21780.1 Cannabis sativa PK21780.1 N 0.941
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.794
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.779
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.838
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.809
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.882
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.779
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.706
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.809
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.809
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.882
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.884
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.824
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.824
sf3b14 Danio rerio ENSDARG00000009753 N 0.779
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.826
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.779
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.750
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.779
GF10910 Drosophila ananassae FBgn0087950 N 0.797
GG14070 Drosophila erecta FBgn0106332 N 0.797
GH16287 Drosophila grimshawi FBgn0123758 N 0.797
CG13298 Drosophila melanogaster FBgn0035692 N 0.797
GI13232 Drosophila mojavensis FBgn0135989 N 0.797
GL22529 Drosophila persimilis FBgn0160121 N 0.797
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.797
GM13852 Drosophila sechellia FBgn0168783 N 0.797
GD13137 Drosophila simulans FBgn0184859 N 0.797
GJ12004 Drosophila virilis FBgn0199256 N 0.797
GK17258 Drosophila willistoni FBgn0219257 N 0.797
GE20495 Drosophila yakuba FBgn0068445 N 0.797
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.855
LOC100056247 Equus caballus ENSECAG00000015618 N 0.779
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.779
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.754
SF3B14 Gallus gallus ENSGALG00000016501 N 0.779
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.779
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.912
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.899
68671 Helobdella robusta 68671 N 0.750
AC008073.5 Homo sapiens ENSG00000115128 N 0.779
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.794
ISCW024082 Ixodes scapularis ISCW024082 N 0.838
LOAG_04189 Loa loa LOAG_04189 N 0.768
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.765
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.899
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.779
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.779
MDP0000185506 Malus x domestica MDP0000185506 N 0.941
MDP0000916880 Malus x domestica MDP0000916880 N 0.882
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.941
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.899
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.779
Minc01156 Meloidogyne incognita Minc01156 N 0.750
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.882
mgf016428m Mimulus guttatus mgf016428m N 0.899
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.765
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.725
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.779
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.779
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.809
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.809
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.838
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.725
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.706
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.779
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.779
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 1.000
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.765
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.794
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.765
1600010087 Ostreococcus tauri 1600010087 N 0.765
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.779
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.779
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.794
PHUM617060 Pediculus humanus PHUM617060 N 0.838
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.797
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.725
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.956
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.884
PITG_10282 Phytophthora infestans PITG_10282 N 0.884
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.855
s_454910 Phytophthora sojae s_454910 N 0.884
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.739
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.754
PFL1200c Plasmodium falciparum PFL1200c N 0.765
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.765
PVX_123875 Plasmodium vivax PVX_123875 N 0.765
PY07239 Plasmodium yoelii PY07239 N 0.706
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.779
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.926
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.941
PPA24922 Pristionchus pacificus PPA24922 N 0.735
ppa013407m Prunus persica ppa013407m N 0.941
ppa013405m Prunus persica ppa013405m N 0.941
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.779
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.754
29868.m000351 Ricinus communis 29868.m000351 N 0.941
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.882
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.779
Smp_032060 Schistosoma mansoni Smp_032060 N 0.779
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.971
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.779
SB01G003790 Sorghum bicolor Sb01g003790 N 0.985
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.779
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.779
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.794
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.779
160.m00066 Tetrahymena thermophila 160.m00066 N 0.710
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.794
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.812
TA13725 Theileria annulata TA13725 N 0.750
TP02_0539 Theileria parva TP02_0539 N 0.706
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.725
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.725
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.725
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.809
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.783
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.779
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.779
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.779
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.941
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.882
AAH57709 Xenopus laevis AAH57709 N 0.765
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.779
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.985
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.985