CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI5G07090
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI5G07090
T33304_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI5G07090.1
RRM
330
399
VYIKNLPLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDRPCH
BRADI5G07090.2
RRM
330
399
VYIKNLPLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDRPCH
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI3G43750
Brachypodium distachyon
BRADI3G43750
N
0.700
BGIOSIBCE007070
Oryza indica
BGIOSIBCE007070
N
0.700
BGIOSIBCE014838
Oryza indica
BGIOSIBCE014838
N
0.771
LOC_Os02g29480
Oryza sativa
LOC_Os02g29480
N
0.700
LOC_Os04g30430
Oryza sativa
LOC_Os04g30430
N
0.771
SB06G009000
Sorghum bicolor
Sb06g009000
N
0.743
SB04G020120
Sorghum bicolor
Sb04g020120
N
0.714
GRMZM2G069174
Zea mays
GRMZM2G069174
N
0.757
GRMZM2G089676
Zea mays
GRMZM2G089676
N
0.700
GRMZM2G091995
Zea mays
GRMZM2G091995
N
0.700
GRMZM2G139407
Zea mays
GRMZM2G139407
N
0.757