CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GRMZM2G091995
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G091995
T54102_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G091995_P01
RRM
312
381
IYVRNLPLNATETQLEDEFKKFGTIKQNGIQVRSNKIQGFCYGFVEFEDSTSVQSAIEASPVMIGGRQCY
GRMZM2G091995_P02
RRM
311
380
IYVRNLPLNATETQLEDEFKKFGTIKQNGIQVRSNKIQGFCYGFVEFEDSTSVQSAIEASPVMIGGRQCY
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB04G020120
Sorghum bicolor
Sb04g020120
N
0.986
GRMZM2G089676
Zea mays
GRMZM2G089676
N
0.986
LOC_Os02g29480
Oryza sativa
LOC_Os02g29480
N
0.871
BGIOSIBCE007070
Oryza indica
BGIOSIBCE007070
N
0.871
GRMZM2G139407
Zea mays
GRMZM2G139407
N
0.800
GRMZM2G069174
Zea mays
GRMZM2G069174
N
0.800
SB06G009000
Sorghum bicolor
Sb06g009000
N
0.800
BRADI3G43750
Brachypodium distachyon
BRADI3G43750
N
0.771
LOC_Os04g30430
Oryza sativa
LOC_Os04g30430
N
0.757
BGIOSIBCE014838
Oryza indica
BGIOSIBCE014838
N
0.757
GSVIVG00008107001
Vitis vinifera
GSVIVG00008107001
N
0.714
XM_002864667.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001690
N
0.700
AT5G60980
Arabidopsis thaliana
AT5G60980-TAIR-G
N
0.700
BRADI5G07090
Brachypodium distachyon
BRADI5G07090
N
0.700
GSVIVG00003923001
Vitis vinifera
GSVIVG00003923001
N
0.700