CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AFUA_5G04240
(
Aspergillus fumigatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAFUAG00002869
T33485_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFUAP00002869
RRM
521
583
LFVGGVTSSEAHLRSLFSKYGVVQTCIVNVDKRHAFIKMITRQDAVNAREGMESYKSGDMQLR
Links
Other
RRM
family RBPs
Other
Aspergillus fumigatus
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_07074
Arthroderma benhamiae
ARB_07074
N
0.825
fgenesh1_pg.00153_#_263
Aspergillus carbonarius
fgenesh1_pg.00153_#_263
N
0.889
ACLA_000920
Aspergillus clavatus
CADACLAG00000330
N
0.889
AFLA_007030
Aspergillus flavus
CADAFLAG00010766
N
0.905
ANIA_08276
Aspergillus nidulans
CADANIAG00004336
N
0.952
An09g06700
Aspergillus niger
CADANGAG00008209
N
0.905
AO090102000629
Aspergillus oryzae
CADAORAG00009913
N
0.905
ATEG_07989
Aspergillus terreus
CADATEAG00005162
N
0.873
BDBG_05846
Blastomyces dermatitidis
BDBG_05846
N
0.873
CIMG_06293
Coccidioides immitis
CIMG_06293
N
0.857
CPSG_00779
Coccidioides posadasii
CPSG_00779
N
0.857
HCAG_11161
Histoplasma capsulatum
HCAG_11161
N
0.857
MCYG_06836
Microsporum canis
MCYG_06836
N
0.841
MGYG_03781
Microsporum gypseum
MGYG_03781
N
0.825
NFIA_037860
Neosartorya fischeri
CADNFIAG00003716
N
0.937
PABG_07318
Paracoccidioides brasiliensis
PABG_07318
N
0.841
Pc12g05410
Penicillium chrysogenum
Pc12g05410
N
0.810
PMAA_095320
Penicillium marneffei
PMAA_095320
N
0.841
TEQG_02925
Trichophyton equinum
TEQG_02925
N
0.825
TERG_04128
Trichophyton rubrum
TERG_04128
N
0.825
TRV_04696
Trichophyton verrucosum
TRV_04696
N
0.825
UREG_04091
Uncinocarpus reesii
UREG_04091
N
0.825