CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AO090001000353
(
Aspergillus oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAORAG00000317
T33657_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAORAP00000314
RRM
92
164
LYVGGLDQRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIR
CADAORAP00000314
RRM
185
255
IFVGDLSNEVNDEILQQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRADADKALGSMDGEWLGSRAIR
CADAORAP00000314
RRM
311
375
CYVGNLTPYTTQNDLVPLFQNFGYVLETRLQADRGFAFIKMDSHENAAMAICQLNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Aspergillus oryzae
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZCCHC4
Erinaceus europaeus
ENSEEUG00000008752
N
0.000
ZCCHC4
Macropus eugenii
ENSMEUG00000016660
N
0.000
ZCCHC4
Ochotona princeps
ENSOPRG00000005480
N
0.000
ZCCHC4
Oryctolagus cuniculus
ENSOCUG00000015990
N
0.000
ZCCHC4
Procavia capensis
ENSPCAG00000002556
N
0.000
Zcchc4
Rattus norvegicus
ENSRNOG00000029064
N
0.000
ZCCHC4
Sorex araneus
ENSSARG00000007999
N
0.000
ZCCHC4
Tarsius syrichta
ENSTSYG00000000364
N
0.000
ZCCHC4
Tupaia belangeri
ENSTBEG00000012685
N
0.000