ELAVL1 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000066044 T37170_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6		 Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		(Direct)
ELAVL1
M031_0.6		 Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		(Direct)
ELAVL1
M108_0.6		 Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		(Direct)
ELAVL1
M112_0.6		 Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		(Direct)
ELAVL1
M127_0.6		 Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		(Direct)
ELAVL1
M232_0.6		 Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.797
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.797
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.797
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.774
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.774
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.774
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M031_0.6 RRM 22 92
M031_0.6 RRM 108 176
M031_0.6 RRM 246 316
M108_0.6 RRM 22 92
M108_0.6 RRM 108 176
M108_0.6 RRM 246 316
M112_0.6 RRM 22 92
M112_0.6 RRM 108 176
M112_0.6 RRM 246 316
M127_0.6 RRM 22 92
M127_0.6 RRM 108 176
M127_0.6 RRM 246 316
M232_0.6 RRM 22 92
M232_0.6 RRM 108 176
M232_0.6 RRM 246 316

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000264073 RRM 49 119
ENSP00000264073 RRM 135 203
ENSP00000264073 RRM 273 343
ENSP00000385269 RRM 22 92
ENSP00000385269 RRM 108 176
ENSP00000385269 RRM 246 316

Links

Other RRM family RBPs
Other Homo sapiens RBPs

169 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHUM241330 Pediculus humanus PHUM241330 I 0.000
XP_001178647.1 Strongylocentrotus purpuratus XP_001178647.1 N 0.000
XP_789638.1 Strongylocentrotus purpuratus XP_789638.1 N 0.000
XP_789661.1 Strongylocentrotus purpuratus XP_789661.1 N 0.000