CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_789638.1
(
Strongylocentrotus purpuratus
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
XP_789638.1
T07729_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_789638.1
RRM
60
125
VYVGNLGESASKSELEKEFGSFGPLKSVWIARNPPGFAFVEFDDPRDASDAVKDLDSSTICGQRAS
XP_789638.1
CCHC ZF
156
172
SKCYECGEIGHFARDCN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Strongylocentrotus purpuratus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_001178879.1
Strongylocentrotus purpuratus
XP_001178879.1
N
1.000
XP_001178647.1
Strongylocentrotus purpuratus
XP_001178647.1
N
0.893
XP_789661.1
Strongylocentrotus purpuratus
XP_789661.1
N
0.893
PHUM241330
Pediculus humanus
PHUM241330
I
0.711