CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q5ZMN1_CHICK
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000004160
T37632_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000006604
RRM
341
411
LFVGNLPHDVDKSELKDFFQKLGSSLAGYGNVVELRINSGGKLPNFGFVVFDDPDPVQKILSNRPIMFRGE
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R008928
Ailuropoda melanoleuca
Ame_R008928
I
0.817
G3BP1
Anolis carolinensis
ENSACAG00000009792
I
0.789
G3BP1
Canis familiaris
ENSCAFG00000017841
I
0.817
G3BP1
Homo sapiens
ENSG00000145907
D
0.817
G3BP1
Meleagris gallopavo
ENSMGAG00000005963
I
0.873
G3BP1
Microcebus murinus
ENSMICG00000012235
I
0.817
XM_001369493.1
Monodelphis domestica
ENSMODG00000008993
I
0.775
XM_001367627.1
Monodelphis domestica
ENSMODG00000013903
N
0.803
G3BP1
Ornithorhynchus anatinus
ENSOANG00000005110
I
0.859
G3BP1
Pan troglodytes
ENSPTRG00000017438
I
0.817
ENSPPYG00000015968
Pongo pygmaeus
ENSPPYG00000015968
I
0.817
G3bp1
Rattus norvegicus
ENSRNOG00000013186
I
0.789
G3BP1
Spermophilus tridecemlineatus
ENSSTOG00000015928
I
0.718
G3BP1
Taeniopygia guttata
ENSTGUG00000000753
I
0.873
G3BP1
Tarsius syrichta
ENSTSYG00000004570
I
0.803
AAH45051
Xenopus laevis
AAH45051
I
0.732
AAH72830
Xenopus laevis
AAH72830
I
0.718
g3bp1
Xenopus tropicalis
ENSXETG00000010712
I
0.831