CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q5ZMN1_CHICK
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000004160
T37632_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000006604
RRM
341
411
LFVGNLPHDVDKSELKDFFQKLGSSLAGYGNVVELRINSGGKLPNFGFVVFDDPDPVQKILSNRPIMFRGE
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
G3BP1
Meleagris gallopavo
ENSMGAG00000005963
I
0.873
G3BP1
Taeniopygia guttata
ENSTGUG00000000753
I
0.873
G3BP1
Ornithorhynchus anatinus
ENSOANG00000005110
I
0.859
G3BP1
Pteropus vampyrus
ENSPVAG00000017250
I
0.831
g3bp1
Xenopus tropicalis
ENSXETG00000010712
I
0.831
G3BP1
Dasypus novemcinctus
ENSDNOG00000018758
I
0.817
G3BP1
Erinaceus europaeus
ENSEEUG00000012278
I
0.817
G3BP1_BOVIN
Bos taurus
ENSBTAG00000020309
I
0.817
G3BP1
Homo sapiens
ENSG00000145907
D
0.817
G3BP1
Loxodonta africana
ENSLAFG00000009182
I
0.817
G3BP1
Vicugna pacos
ENSVPAG00000004461
I
0.817
G3BP1
Echinops telfairi
ENSETEG00000017447
I
0.817
G3BP1
Microcebus murinus
ENSMICG00000012235
I
0.817
G3BP1
Tupaia belangeri
ENSTBEG00000004386
I
0.817
ENSPPYG00000015968
Pongo pygmaeus
ENSPPYG00000015968
I
0.817
G3BP1
Callithrix jacchus
ENSCJAG00000015407
I
0.817
LOC100060090
Equus caballus
ENSECAG00000003368
I
0.817
G3BP1
Macaca mulatta
ENSMMUG00000014701
I
0.817
G3BP1
Myotis lucifugus
ENSMLUG00000001581
I
0.817
G3BP1
Pan troglodytes
ENSPTRG00000017438
I
0.817
ENSOCUG00000022069
Oryctolagus cuniculus
ENSOCUG00000022069
I
0.817
Ame_R008928
Ailuropoda melanoleuca
Ame_R008928
I
0.817
G3BP1
Canis familiaris
ENSCAFG00000017841
I
0.817
ENSCHOG00000010802
Choloepus hoffmanni
ENSCHOG00000010802
I
0.817
ENSOCUG00000022143
Oryctolagus cuniculus
ENSOCUG00000022143
I
0.817
ENSCPOG00000006626
Cavia porcellus
ENSCPOG00000006626
I
0.803
ENSSSCG00000017080
Sus scrofa
ENSSSCG00000017080
I
0.803
G3BP1
Tarsius syrichta
ENSTSYG00000004570
I
0.803
XM_001367627.1
Monodelphis domestica
ENSMODG00000013903
N
0.803
ENSSSCG00000017079
Sus scrofa
ENSSSCG00000017079
I
0.803
G3bp1
Mus musculus
ENSMUSG00000018583
I
0.789
G3BP1
Ochotona princeps
ENSOPRG00000010562
I
0.789
G3bp1
Rattus norvegicus
ENSRNOG00000013186
I
0.789
G3BP1
Anolis carolinensis
ENSACAG00000009792
I
0.789
XM_001369493.1
Monodelphis domestica
ENSMODG00000008993
I
0.775
G3BP1
Gasterosteus aculeatus
ENSGACG00000016848
I
0.746
G3BP1
Tetraodon nigroviridis
ENSTNIG00000012954
I
0.732
AAH45051
Xenopus laevis
AAH45051
I
0.732
G3BP1
Oryzias latipes
ENSORLG00000011422
I
0.718
AAH72830
Xenopus laevis
AAH72830
I
0.718
G3BP1
Spermophilus tridecemlineatus
ENSSTOG00000015928
I
0.718
g3bp1
Danio rerio
ENSDARG00000017741
I
0.718
G3BP2
Gasterosteus aculeatus
ENSGACG00000017342
I
0.703