CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_001362178.1
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000000082
T39022_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000000087
RRM
167
199
EKPNEEVLIKVFETFGEIRNVDIPMLDPYREEM
ENSMODP00000000087
RRM
203
242
NFHTFSFGGHLNFEAYVQYREYVGFIKAMNALRGMKLMYK
ENSMODP00000037744
RRM
167
200
EKPNEEVLIKVFETFGEIRNVDIPMLDPYREEMT
ENSMODP00000037744
RRM
203
242
NFHTFSFGGHLNFEAYVQYREYVGFIKAMNALRGMKLMYK
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AKAP17A
Anolis carolinensis
ENSACAG00000005956
N
0.946
LOC100391823
Callithrix jacchus
ENSCJAG00000004065
N
0.893
SFRS17A
Gallus gallus
ENSGALG00000016686
N
0.918
AKAP17A
Meleagris gallopavo
ENSMGAG00000014740
N
0.918
SFRS17A
Taeniopygia guttata
ENSTGUG00000010729
N
0.932
AKAP17A
Tetraodon nigroviridis
ENSTNIG00000016428
N
0.714