CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AKAP17A
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000016428
T42150_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000019526
RRM
164
198
SQFPDRPSEEALIAVFQAFGKVRNVDIPMLDPYRE
ENSTNIP00000019526
RRM
203
243
KNFNTFSFGGHLNFEAYVQYQEYCGFTKAMDTLRGMKLMLK
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SFRS17A
Taeniopygia guttata
ENSTGUG00000010729
N
0.727
AKAP17A
Meleagris gallopavo
ENSMGAG00000014740
N
0.727
SFRS17A
Gallus gallus
ENSGALG00000016686
N
0.727
XM_001362178.1
Monodelphis domestica
ENSMODG00000000082
N
0.714
AKAP17A
Anolis carolinensis
ENSACAG00000005956
N
0.705