CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TNRC6C
(
Pan troglodytes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPTRG00000009699
T40689_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000016494
RRM
408
472
LVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTIL
ENSPTRP00000016495
RRM
1564
1628
LVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Pan troglodytes
RBPs
116 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK05006.1
Cannabis sativa
PK05006.1
N
0.000
MDP0000596287
Malus x domestica
MDP0000596287
N
0.000
cassava28770.m1
Manihot esculenta
cassava28770.m1
N
0.000
Medtr8g077770
Medicago truncatula
Medtr8g077770
N
0.000
mgf014593m
Mimulus guttatus
mgf014593m
N
0.000
PDK_20s1330821g002
Phoenix dactylifera
PDK_20s1330821g002
N
0.000
A9PE83_POPTR
Populus trichocarpa
POPTR_0001s02090
N
0.000
ppb024236m
Prunus persica
ppb024236m
N
0.000
30073.m002271
Ricinus communis
30073.m002271
N
0.000
GSVIVG00024381001
Vitis vinifera
GSVIVG00024381001
N
0.000
GSVIVG00013098001
Vitis vinifera
GSVIVG00013098001
N
0.000
GRMZM2G035719
Zea mays
GRMZM2G035719
N
0.000