RGD1564416 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000023882 T41166_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.755
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.755
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.755
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000034173 RRM 17 81
ENSRNOP00000034173 RRM 104 173

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.000
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.000
KRR1 Candida albicans orf19.661 N 0.000
Cd36_10710 Candida dubliniensis Cd36_10710 N 0.000
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.000
CLUG_04903 Candida lusitaniae CLUG_04903 N 0.000
CPAG_00706 Candida parapsilosis CPAG_00706 N 0.000
CTRG_04103 Candida tropicalis CTRG_04103 N 0.000
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
Chro.30334 Cryptosporidium hominis Chro.30334 N 0.000
CMU_000450 Cryptosporidium muris CMU_000450 N 0.000
cgd3_2950 Cryptosporidium parvum cgd3_2950 N 0.000
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.000
XP_002158002.1 Hydra magnipapillata XP_002158002.1 N 0.000
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.000
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.000
LELG_00899 Lodderomyces elongisporus LELG_00899 N 0.000
Medtr5g094630 Medicago truncatula Medtr5g094630 N 0.000
NCLIV_025560 Neospora caninum NCLIV_025560 N 0.000
PHATRDRAFT_45441 Phaeodactylum tricornutum Phatr45441 N 0.000
e_gwh1.2.1.2136.1 Pichia stipitis e_gwh1.2.1.2136.1 N 0.000
PredSwiss_ASS2010_156.1 Pneumocystis carinii PredSwiss_ASS2010_156.1 N 0.000
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.000
KRR1 Saccharomyces cerevisiae YCL059C N 0.000
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.000
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.000
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.000
3707.m00252 Tetrahymena thermophila 3707.m00252 N 0.000
TP02_0631 Theileria parva TP02_0631 N 0.000
TGGT1_008040 Toxoplasma gondii TGGT1_008040 N 0.000
TGME49_062070 Toxoplasma gondii TGME49_062070 N 0.000
TGVEG_072780 Toxoplasma gondii TGVEG_072780 N 0.000
TVAG_171780 Trichomonas vaginalis TVAG_171780 N 0.000
A7TFC5_VANPO Vanderwaltozyma polyspora A7TFC5_VANPO N 0.000