CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RGD1564416
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000023882
T41166_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.755
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.755
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.755
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.734
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000034173
RRM
17
81
LIRGLSFETTDESLKTMENTSNFLVMRDPNTKRSRGFGFVPYTTVEEVDATMNARPHKVGGRVVG
ENSRNOP00000034173
RRM
104
173
VLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN18741
Caenorhabditis brenneri
CBN18741
N
0.000
CBN25209
Caenorhabditis brenneri
CBN25209
N
0.000
CBG21723
Caenorhabditis briggsae
CBG21723
N
0.000
cfim-2
Caenorhabditis elegans
D1046.1
N
0.000
CJA00774
Caenorhabditis japonica
CJA00774
N
0.000
CRE04437
Caenorhabditis remanei
CRE04437
N
0.000