RGD1564416 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000023882 T41166_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.755
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.755
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.755
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000034173 RRM 17 81
ENSRNOP00000034173 RRM 104 173

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.734
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.726
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.721
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.718
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.716
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.714
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.714
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.714
HNRNPA1 Homo sapiens ENSG00000135486 D 0.714
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.714
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.714
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.714
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.714
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.714
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.714
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.714
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.714
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.714
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.714
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.714
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.714
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.714
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.714
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.714
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.714
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.714
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.714
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.714
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.714
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.714
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.714
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.714
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.714
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.714
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.714
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.714
LOC100054206 Equus caballus ENSECAG00000006699 I 0.712
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.711
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.711
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.707
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.707
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.707
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.707
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.707
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.707
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.706
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.701
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.701
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.701
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.701
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.701
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.701
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.701
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.701