CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSRNOG00000029898
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000029898
T41204_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000047221
RRM
1
35
TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVE
ENSRNOP00000047221
RRM
57
127
IFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQKYHTVNGHHKCE
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSGACG00000009435
Gasterosteus aculeatus
ENSGACG00000009435
I
0.750
ENSMMUG00000005993
Macaca mulatta
ENSMMUG00000005993
I
0.708
HNRNPA3
Monodelphis domestica
ENSMODG00000019803
I
0.735
HNRNPA3
Tarsius syrichta
ENSTSYG00000012949
N
0.734