CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM41
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000012556
T41490_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM41
M051_0.6
Homo sapiens
WUACWUK
RNAcompete
Ray et al.(2013)
RNCMPT00053
0.958
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000013350
RRM
311
381
LYLKNLSPRVTEKDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALRLVNGYKLRGKILV
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL801114
Aedes aegypti
AAEL017419
N
0.000
BGIBMGA004191
Bombyx mori
BGIBMGA004191
N
0.000
CpipJ_CPIJ001891
Culex pipiens
CpipJ_CPIJ001891
N
0.000
CPIJ001891
Culex quinquefasciatus
CPIJ001891
N
0.000