CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP1
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000004570
T42435_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP1
M302_0.6
Homo sapiens
Sequence logo not available
ACCCMYMSGCMS
SELEX
Cook et al.(2011)
432_11604510
0.969
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000004194
RRM
342
405
LFIGNLPHEVDKAELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGE
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
87 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.11.214.1
Batrachochytrium dendrobatidis
gw1.11.214.1
N
0.000
gw1.3.766.1
Micromonas pusilla
gw1.3.766.1
N
0.000
gwEuk.5.447.1
Ostreococcus lucimarinus
gwEuk.5.447.1
N
0.000
0500010280
Ostreococcus tauri
0500010280
N
0.000
estExt_fgenesh2_pg.C_120136
Selaginella moellendorfii
estExt_fgenesh2_pg.C_120136
N
0.000