CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GH17270
(
Drosophila grimshawi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0124740
T43492_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG17838
M123_0.6
Drosophila melanogaster
BAAAUUD
RNAcompete
Ray et al.(2013)
RNCMPT00131
0.872
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0151176
RRM
169
239
VFCGKIPKDMFEDELIPLFENCGVIWDLRLMMDPMTGTNRGYAFVTFTNREAAINAVRQLNDFEIRKGKKI
FBpp0151176
RRM
250
317
LFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIK
FBpp0151176
RRM
345
407
LYVRNLTQDVTEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNGKEVGASNIE
Links
Other
RRM
family RBPs
Other
Drosophila grimshawi
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc09910
Meloidogyne incognita
Minc09910
N
0.000