CG17838 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0038826 T43080_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG17838
M123_0.6		 Drosophila melanogaster BAAAUUD RNAcompete
Ray et al.(2013)
RNCMPT00131 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M123_0.6 RRM 51 121
M123_0.6 RRM 132 200
M123_0.6 RRM 227 289

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0083365 RRM 200 270
FBpp0083365 RRM 281 348
FBpp0083365 RRM 376 438
FBpp0083366 RRM 166 236
FBpp0083366 RRM 247 314
FBpp0083366 RRM 342 404
FBpp0083367 RRM 166 236
FBpp0083367 RRM 247 314
FBpp0083367 RRM 342 404
FBpp0083368 RRM 166 236
FBpp0083368 RRM 247 314
FBpp0083368 RRM 342 404
FBpp0083369 RRM 208 278
FBpp0083369 RRM 289 356
FBpp0083369 RRM 384 446
FBpp0083370 RRM 208 278
FBpp0083370 RRM 289 356
FBpp0083370 RRM 384 446
FBpp0112167 RRM 7 69
FBpp0112168 RRM 171 241
FBpp0112168 RRM 252 319
FBpp0112168 RRM 347 409

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GM23135 Drosophila sechellia FBgn0178003 I 1.000
GE25686 Drosophila yakuba FBgn0242747 I 1.000
GG24121 Drosophila erecta FBgn0116260 I 1.000
GF16693 Drosophila ananassae FBgn0093714 I 0.990
GA27045-RA Drosophila pseudoobscura FBgn0248416 I 0.980
GI10594 Drosophila mojavensis FBgn0133358 I 0.975
GK22469 Drosophila willistoni FBgn0224446 I 0.975
GJ22950 Drosophila virilis FBgn0210053 I 0.975
GH17270 Drosophila grimshawi FBgn0124740 I 0.965
AGAP001419 Anopheles gambiae AGAP001419 I 0.881
AAEL002879 Aedes aegypti AAEL002879 I 0.881
nasonia_NCBI_hmm256414 Nasonia vitripennis nasonia_NCBI_hmm256414 I 0.876
amel4_ncbi_hmm4283 Apis mellifera amel4_ncbi_hmm4283 I 0.867
PHUM268060 Pediculus humanus PHUM268060 I 0.828
ISCW004858 Ixodes scapularis ISCW004858 I 0.772
NCBI_GNO_2900131 Daphnia pulex NCBI_GNO_2900131 I 0.718